Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CH92_RS03350 Genome accession   NZ_CP007441
Coordinates   708402..708896 (+) Length   164 a.a.
NCBI ID   WP_025240359.1    Uniprot ID   W8RQ74
Organism   Stutzerimonas stutzeri strain 28a24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 703402..713896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH92_RS03340 (CH92_03410) uvrA 703888..706725 (-) 2838 WP_025240357.1 excinuclease ABC subunit UvrA -
  CH92_RS03345 (CH92_03415) - 706857..708224 (+) 1368 WP_025240358.1 MFS transporter -
  CH92_RS03350 (CH92_03420) ssb 708402..708896 (+) 495 WP_025240359.1 single-stranded DNA-binding protein Machinery gene
  CH92_RS03355 (CH92_03425) - 708907..709791 (+) 885 WP_025240360.1 sugar nucleotide-binding protein -
  CH92_RS03360 (CH92_03430) - 709784..710722 (+) 939 WP_025240361.1 NAD-dependent epimerase/dehydratase family protein -
  CH92_RS03365 (CH92_03435) - 710782..711468 (-) 687 WP_025240362.1 OmpW family outer membrane protein -
  CH92_RS03370 (CH92_03440) - 711741..712511 (+) 771 WP_025240363.1 DUF3450 domain-containing protein -
  CH92_RS03375 (CH92_03445) - 712508..713854 (+) 1347 WP_025240364.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18379.32 Da        Isoelectric Point: 5.3024

>NTDB_id=119344 CH92_RS03350 WP_025240359.1 708402..708896(+) (ssb) [Stutzerimonas stutzeri strain 28a24]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQQQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMGGTMQLLGGRGGSSDDAPRQSQPRPQRESQPQQQSRPQSQPQPAQQPAPDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=119344 CH92_RS03350 WP_025240359.1 708402..708896(+) (ssb) [Stutzerimonas stutzeri strain 28a24]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCCACCACCGACAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGCACCGAGT
GGCACCGTGTCGTGCTGTTCGGCAAGGTTGCCGAGATTGCTGGCGAGTACCTGCGCAAGGGCTCGCAGTGCTACATCGAG
GGCCGCCTGCAGACCCGTGAATGGGAGAAGGATGGCGTTAAGCGTTACACCACCGAGATAGTAGTGGACATGGGCGGTAC
CATGCAGCTGCTCGGCGGCCGCGGTGGCAGCTCCGACGATGCACCGCGTCAGTCCCAGCCGCGTCCTCAGCGTGAATCGC
AGCCACAGCAGCAGTCGCGCCCACAGTCTCAGCCGCAGCCTGCCCAGCAGCCCGCTCCGGACTACGACAGCTTCGACGAC
GATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8RQ74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.192

100

0.628
  ssb Neisseria meningitidis MC58

46.703

100

0.518
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.512
  ssb Neisseria gonorrhoeae MS11

45.251

100

0.494

Multiple sequence alignment