Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CD58_RS24410 Genome accession   NZ_CP007410
Coordinates   5695067..5696413 (+) Length   448 a.a.
NCBI ID   WP_025215541.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain DF41     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5690067..5701413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD58_RS24390 (CD58_25350) pgeF 5690237..5690962 (-) 726 WP_025215536.1 peptidoglycan editing factor PgeF -
  CD58_RS24395 (CD58_25355) rluD 5690959..5691921 (-) 963 WP_025215537.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CD58_RS24400 (CD58_25365) - 5692073..5693089 (+) 1017 WP_025215538.1 outer membrane protein assembly factor BamD -
  CD58_RS29575 (CD58_25370) - 5693258..5693491 (+) 234 WP_025215539.1 PP0621 family protein -
  CD58_RS24405 (CD58_25375) pilS 5693481..5695070 (+) 1590 WP_025215540.1 two-component system sensor histidine kinase NtrB Regulator
  CD58_RS24410 (CD58_25380) pilR 5695067..5696413 (+) 1347 WP_025215541.1 sigma-54-dependent transcriptional regulator Regulator
  CD58_RS24415 (CD58_25385) - 5696600..5696965 (-) 366 WP_025215542.1 DUF6124 family protein -
  CD58_RS31145 (CD58_25395) - 5697987..5698151 (-) 165 WP_158482165.1 hypothetical protein -
  CD58_RS24425 (CD58_25400) thiO 5698297..5699397 (-) 1101 WP_025215544.1 glycine oxidase ThiO -
  CD58_RS24430 (CD58_25405) - 5699452..5699853 (-) 402 WP_025215545.1 type IV pilin protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50189.67 Da        Isoelectric Point: 6.1394

>NTDB_id=119275 CD58_RS24410 WP_025215541.1 5695067..5696413(+) (pilR) [Pseudomonas brassicacearum strain DF41]
MNIRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQSLLMAEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPSVATPATTIERCLLGDSPPMRSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRTNQRFVPVNCGAIPTELMESEFFGHRRGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLA
EHMLQRLAANAGSPAVKLHPQALDALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLAEGNGSAEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=119275 CD58_RS24410 WP_025215541.1 5695067..5696413(+) (pilR) [Pseudomonas brassicacearum strain DF41]
TTGAATATTCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
AAGGATGAAACTCGACACCCGCAGCGCCAAGAACCTCGCCGAGGCCCAAAGCCTGCTGATGGCCGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAGCGTTACCCCCAACTTCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTGAAGGCCGGGGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGCCGCCTGCGAGAGCTGGTCACCAGTGCCTTGCGCCTGCCATCCGTCGCCACACCGGCCACCACCA
TCGAGCGCTGCCTGCTGGGCGACTCCCCACCGATGCGCAGCGTGCGCAAACAGATCGAAAAACTCGCCCGGAGCCAGGCA
CCGGTGTACATCAGCGGGGAGTCAGGTTGCGGCAAGGAACTGGTTGCCCGATTGATCCACGAACAAGGTCCCCGCACCAA
CCAGCGTTTTGTACCGGTCAACTGTGGGGCGATTCCCACCGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAGAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCCGGATTGTTCCAGGCCGCCCACGGCGGGACCCTGTTCCTCGATGAAGTGGCC
GACCTGCCCTTGGCCATGCAGGTCAAACTGTTGCGGGCGATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAGCAGGA
AGAAGTGGTGGATGTGCGCATCCTCTGCGCGACCCACAAGGACCTGGACGGCGAAGTAGCCGCCGGGCGCTTTCGCCAGG
ACCTGTACTATCGGCTGAACGTCATCGAACTGCGTGTGCCGCCATTGCGTGAACGCCGCGAAGACATTGGGCTGCTGGCC
GAGCACATGCTCCAGCGCCTGGCGGCCAACGCCGGCAGCCCTGCGGTCAAGCTTCATCCCCAAGCGCTGGATGCCCTGCG
CAACTATCGCTTCCCGGGCAATGTGCGGGAACTGGAGAACATGCTCGAACGGGCCTACACCCTTTGTGAGCATCAACAGA
TCGAAGCCGACGACCTGCGCCTGGCCGAGGGCAATGGCAGCGCTGAGGCGGGCAATCCCGACTTGATGCAGGTCGACAAT
TTGGAAGACTACCTGGAAGACGTCGAACGCAAACTCATCCTCCAGGCCTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.604

99.107

0.779
  pilR Acinetobacter baumannii strain A118

49.455

100

0.507

Multiple sequence alignment