Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CD58_RS20650 Genome accession   NZ_CP007410
Coordinates   4859565..4861811 (-) Length   748 a.a.
NCBI ID   WP_025214876.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain DF41     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4854565..4866811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD58_RS20615 (CD58_21455) murB 4854948..4855967 (-) 1020 WP_025214870.1 UDP-N-acetylmuramate dehydrogenase -
  CD58_RS20620 (CD58_21460) - 4855964..4856428 (-) 465 WP_025214871.1 low molecular weight protein-tyrosine-phosphatase -
  CD58_RS20625 (CD58_21465) kdsB 4856428..4857192 (-) 765 WP_025214872.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CD58_RS20630 (CD58_21470) - 4857189..4857374 (-) 186 WP_003179363.1 Trm112 family protein -
  CD58_RS20635 (CD58_21475) lpxK 4857398..4858408 (-) 1011 WP_025214873.1 tetraacyldisaccharide 4'-kinase -
  CD58_RS20640 (CD58_21480) - 4858408..4858836 (-) 429 WP_025214874.1 ExbD/TolR family protein -
  CD58_RS20645 (CD58_21485) exbB 4858833..4859468 (-) 636 WP_025214875.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CD58_RS20650 (CD58_21490) comA 4859565..4861811 (-) 2247 WP_025214876.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CD58_RS20655 (CD58_21495) - 4861957..4862472 (+) 516 WP_025214877.1 DUF2062 domain-containing protein -
  CD58_RS20660 (CD58_21500) - 4863343..4864122 (-) 780 WP_025214878.1 ABC transporter permease -
  CD58_RS20665 (CD58_21505) - 4864119..4865051 (-) 933 WP_025214879.1 ABC transporter ATP-binding protein -
  CD58_RS20670 (CD58_21510) - 4865185..4865808 (-) 624 WP_038436924.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 81338.28 Da        Isoelectric Point: 10.2253

>NTDB_id=119269 CD58_RS20650 WP_025214876.1 4859565..4861811(-) (comA) [Pseudomonas brassicacearum strain DF41]
MRTGLVALALGLLAPVFLPALPPLWLIAVMPVFALMVLPFRTYPLGFFLFGLAWACLSAQFALDDRLPVTLEGETRWVEG
RVVGLPQYSDGVVRFELADAQSRRTRLPTSMRLAWFGGPPVSSGERWRLAVKLKRPAGLLNPHGFDYEAWLLSRGIGATG
TVKDGRRLLPAQGAWRDGVRQALAQVDAQGRSGALAALVLGDGSGLSRDDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGVWPARLPWLPWACALAFSAALGYGLLAGFEVPVRRACAMIGLVLLWRWRFKHPDPWWAWLLAFNGVLLFDPL
ASLRPGFWLSFTAVAILIFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLVLGLPVSLSGPLVNLLAVPWISLLVLPSAL
LGTALLPVPFIGEGLLWMAGGLLDLLFKGLAWVAGRMPAWMPASVPFWAWGIAALGAFLQLLPKGLPLRVLGWPMLLLMV
FPPRESVPPGHAEIWHLDVGQGLAVLVRTRRHTLLYDAGPRFGEADAGERVVLPTLRKLGVQALDLMLLSHADADHAGGA
RAVRNGLSTTRVISGDPAALPDELQAGACDSGERWEWDGVRFELWQWSAALESNQKSCVLLVEAGGERLLLTGDIDTHAE
HALLGGPLAVPIQWLAAAHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPRVLARYRRLGMAIYDSAEQGAIRLQL
GAHEPPFTEAGQRRYWRSPPPAGPKAGH

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=119269 CD58_RS20650 WP_025214876.1 4859565..4861811(-) (comA) [Pseudomonas brassicacearum strain DF41]
ATGCGCACAGGATTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGGTTTTTTTACCGGCACTGCCGCCGCTGTGGCTGAT
TGCGGTCATGCCGGTGTTCGCGCTGATGGTTTTGCCGTTTCGAACCTATCCGCTGGGTTTTTTCCTGTTCGGGTTGGCCT
GGGCCTGCCTGTCGGCGCAGTTTGCGCTGGACGACCGATTACCCGTCACGCTGGAGGGAGAAACCCGCTGGGTCGAAGGG
CGCGTCGTCGGCTTGCCGCAGTACAGCGACGGCGTGGTGCGTTTCGAACTGGCCGATGCCCAGTCACGTCGTACCCGGCT
GCCGACCTCGATGCGCCTGGCCTGGTTTGGTGGTCCACCCGTCAGCAGCGGCGAGCGATGGCGATTGGCAGTGAAACTCA
AACGGCCCGCCGGGCTGCTGAACCCACACGGTTTCGACTATGAAGCCTGGCTGTTGAGTCGAGGCATCGGGGCGACTGGC
ACGGTGAAGGACGGCCGTCGTCTCCTGCCGGCGCAGGGCGCGTGGCGTGACGGCGTGCGACAGGCGCTGGCCCAGGTCGA
TGCCCAGGGTCGTTCCGGTGCGTTGGCGGCCTTGGTGCTTGGCGACGGCAGCGGATTGAGCCGCGATGACTGGCAAGTGC
TGCAAGACACAGGCACCGTCCATTTACTGGTGATTTCCGGGCAGCACATCGGCCTGCTCGCCGGCCTGGTGTACCTGCTT
GTGGCCGGTGCAGCACGCTATGGCGTGTGGCCGGCGCGTTTGCCGTGGTTGCCTTGGGCCTGCGCGCTGGCCTTCAGCGC
GGCCCTGGGCTATGGCTTGCTCGCCGGCTTTGAGGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGGCTGGTGCTGCTGT
GGCGCTGGCGCTTCAAACATCCGGATCCTTGGTGGGCCTGGCTGCTGGCCTTTAATGGCGTGCTGCTGTTCGATCCGCTG
GCTAGCCTGCGGCCAGGGTTCTGGCTGTCGTTTACGGCAGTGGCGATATTGATATTCACCTTTGGCGGTCGCCTGGGCCC
CTGGCGCTGGTGGCAGACCTGGACCCGTGCCCAATGGCTGGTGGCGGTCGGTCTGTGTCCGTTGCTGTTGGTATTGGGCT
TGCCGGTCAGTCTGAGCGGACCCCTGGTGAACTTGCTGGCAGTGCCTTGGATCAGCCTGTTGGTGTTGCCGTCGGCGCTG
CTCGGCACGGCGTTGTTGCCGGTGCCATTCATCGGTGAGGGGCTGCTGTGGATGGCGGGCGGCTTGCTCGATTTGTTGTT
CAAGGGGCTGGCATGGGTTGCCGGGCGAATGCCGGCGTGGATGCCTGCTTCGGTCCCGTTCTGGGCCTGGGGCATCGCCG
CCCTCGGTGCCTTTTTGCAGCTGTTGCCCAAGGGCCTGCCGCTGCGGGTGCTGGGGTGGCCGATGCTGCTGTTGATGGTT
TTCCCGCCGCGAGAAAGCGTGCCGCCAGGCCATGCCGAAATCTGGCACCTGGACGTAGGCCAAGGGCTCGCGGTGCTCGT
GCGTACCCGTCGCCATACCCTGCTCTACGATGCCGGGCCGCGCTTTGGTGAGGCTGACGCGGGCGAGCGTGTGGTGCTGC
CCACCTTGCGCAAACTGGGGGTACAGGCCCTGGACCTGATGCTGCTCAGCCATGCCGACGCCGACCACGCTGGCGGTGCC
CGTGCCGTGCGTAACGGCCTGTCAACGACGCGTGTGATCAGCGGAGATCCTGCCGCGCTACCTGATGAACTGCAGGCGGG
TGCCTGCGACAGCGGCGAGCGTTGGGAGTGGGACGGGGTCAGGTTCGAACTCTGGCAATGGTCCGCAGCTCTTGAAAGCA
ACCAGAAGTCCTGTGTCTTGCTGGTCGAGGCTGGCGGCGAGCGCTTGCTGCTGACCGGCGACATTGATACCCATGCCGAA
CACGCCTTGCTCGGCGGGCCCCTGGCGGTACCGATCCAATGGTTGGCCGCTGCGCATCATGGCAGCCGCAGCTCCTCGTC
GATGGCGCTATTGTCGCGCTTGAAACCTCATTCGGTGCTGATTTCCCGGGGACAAGGCAACGCGTTTGGTCATCCGCATC
CCCGGGTGCTCGCTCGCTACCGACGGCTGGGCATGGCGATTTATGACAGTGCCGAACAAGGCGCCATTCGTCTGCAACTG
GGCGCCCATGAACCCCCTTTCACCGAGGCCGGGCAACGACGCTATTGGCGCAGTCCGCCGCCTGCGGGGCCAAAGGCCGG
ACATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.754

95.722

0.582
  comA Ralstonia pseudosolanacearum GMI1000

32.701

100

0.369

Multiple sequence alignment