Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CD58_RS20645 Genome accession   NZ_CP007410
Coordinates   4858833..4859468 (-) Length   211 a.a.
NCBI ID   WP_025214875.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain DF41     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4853833..4864468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD58_RS20610 (CD58_21450) - 4854210..4854680 (-) 471 WP_025214869.1 (2Fe-2S)-binding protein -
  CD58_RS20615 (CD58_21455) murB 4854948..4855967 (-) 1020 WP_025214870.1 UDP-N-acetylmuramate dehydrogenase -
  CD58_RS20620 (CD58_21460) - 4855964..4856428 (-) 465 WP_025214871.1 low molecular weight protein-tyrosine-phosphatase -
  CD58_RS20625 (CD58_21465) kdsB 4856428..4857192 (-) 765 WP_025214872.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CD58_RS20630 (CD58_21470) - 4857189..4857374 (-) 186 WP_003179363.1 Trm112 family protein -
  CD58_RS20635 (CD58_21475) lpxK 4857398..4858408 (-) 1011 WP_025214873.1 tetraacyldisaccharide 4'-kinase -
  CD58_RS20640 (CD58_21480) - 4858408..4858836 (-) 429 WP_025214874.1 ExbD/TolR family protein -
  CD58_RS20645 (CD58_21485) exbB 4858833..4859468 (-) 636 WP_025214875.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CD58_RS20650 (CD58_21490) comA 4859565..4861811 (-) 2247 WP_025214876.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CD58_RS20655 (CD58_21495) - 4861957..4862472 (+) 516 WP_025214877.1 DUF2062 domain-containing protein -
  CD58_RS20660 (CD58_21500) - 4863343..4864122 (-) 780 WP_025214878.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22799.88 Da        Isoelectric Point: 7.3613

>NTDB_id=119268 CD58_RS20645 WP_025214875.1 4858833..4859468(-) (exbB) [Pseudomonas brassicacearum strain DF41]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYISTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=119268 CD58_RS20645 WP_025214875.1 4858833..4859468(-) (exbB) [Pseudomonas brassicacearum strain DF41]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCAGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAACTGAACAAGGACAAGCTCAAGGAACTGCGGGCCAGTTCGCCCCTGGGCGAAGTCCTGGCCGCAGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACAT
CAGCACCCTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGTTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCGTTCACCGGCTCCGGCATGACCACCAACGCCGCCGTGCTGGCGGGGGGGATTTCCAAAGCCTTGATCACCACCGCT
GCCGGCCTGATGGTGGGTATCCCTGCGGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTCGACGAACTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGTTGGTGGAGGTGGTGCAAGGTGATCGTGACGTGGACCTGGCCGGGGGCAAGCAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844

Multiple sequence alignment