Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AJ82_RS19055 Genome accession   NZ_CP007244
Coordinates   3941310..3941828 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis TrigoCor1448     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3936310..3946828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS19025 (AJ82_21375) - 3937506..3937886 (-) 381 WP_025285587.1 VOC family protein -
  AJ82_RS19030 (AJ82_21380) - 3937943..3938881 (-) 939 WP_025285588.1 LacI family DNA-binding transcriptional regulator -
  AJ82_RS19035 (AJ82_21385) xth 3938944..3939702 (-) 759 WP_025285589.1 exodeoxyribonuclease III -
  AJ82_RS19040 (AJ82_21390) - 3939699..3940256 (-) 558 WP_025285590.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AJ82_RS19045 (AJ82_21395) - 3940253..3940834 (-) 582 WP_025285591.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  AJ82_RS19050 (AJ82_21405) rpsR 3941027..3941266 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  AJ82_RS19055 (AJ82_21410) ssbA 3941310..3941828 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  AJ82_RS19060 (AJ82_21415) rpsF 3941868..3942155 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  AJ82_RS19065 (AJ82_21420) ychF 3942267..3943367 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  AJ82_RS19070 (AJ82_21425) - 3943494..3945497 (-) 2004 WP_025285592.1 molybdopterin-dependent oxidoreductase -
  AJ82_RS19075 (AJ82_21430) - 3945544..3945750 (-) 207 WP_012118942.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=118266 AJ82_RS19055 WP_004392979.1 3941310..3941828(-) (ssbA) [Bacillus velezensis TrigoCor1448]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=118266 AJ82_RS19055 WP_004392979.1 3941310..3941828(-) (ssbA) [Bacillus velezensis TrigoCor1448]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTAGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAAACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAATAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment