Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AJ82_RS16440 Genome accession   NZ_CP007244
Coordinates   3415300..3415989 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis TrigoCor1448     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3410300..3420989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS16405 (AJ82_18400) - 3410497..3410979 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AJ82_RS16410 (AJ82_18405) flgM 3410994..3411260 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AJ82_RS16415 (AJ82_18410) - 3411330..3411749 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  AJ82_RS16420 (AJ82_18415) comFC 3411823..3412512 (-) 690 WP_199022660.1 phosphoribosyltransferase family protein Machinery gene
  AJ82_RS16425 (AJ82_18420) - 3412518..3412802 (-) 285 WP_007407481.1 competence protein ComFB -
  AJ82_RS16430 (AJ82_18425) comFA 3412860..3414245 (-) 1386 WP_025285354.1 DEAD/DEAH box helicase Machinery gene
  AJ82_RS16435 (AJ82_18430) - 3414354..3415202 (-) 849 WP_003151387.1 DegV family protein -
  AJ82_RS16440 (AJ82_18435) degU 3415300..3415989 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AJ82_RS16445 (AJ82_18440) degS 3416066..3417229 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AJ82_RS16450 (AJ82_18445) - 3417452..3418099 (+) 648 WP_007614107.1 YigZ family protein -
  AJ82_RS16455 (AJ82_18450) - 3418104..3419339 (+) 1236 WP_025285355.1 LCP family protein -
  AJ82_RS16460 (AJ82_18455) - 3419438..3420514 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=118257 AJ82_RS16440 WP_003219701.1 3415300..3415989(-) (degU) [Bacillus velezensis TrigoCor1448]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=118257 AJ82_RS16440 WP_003219701.1 3415300..3415989(-) (degU) [Bacillus velezensis TrigoCor1448]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment