Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AJ82_RS16430 Genome accession   NZ_CP007244
Coordinates   3412860..3414245 (-) Length   461 a.a.
NCBI ID   WP_025285354.1    Uniprot ID   -
Organism   Bacillus velezensis TrigoCor1448     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3407860..3419245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS16395 (AJ82_18390) flgL 3408035..3408952 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  AJ82_RS16400 (AJ82_18395) flgK 3408964..3410481 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  AJ82_RS16405 (AJ82_18400) - 3410497..3410979 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AJ82_RS16410 (AJ82_18405) flgM 3410994..3411260 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AJ82_RS16415 (AJ82_18410) - 3411330..3411749 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  AJ82_RS16420 (AJ82_18415) comFC 3411823..3412512 (-) 690 WP_199022660.1 phosphoribosyltransferase family protein Machinery gene
  AJ82_RS16425 (AJ82_18420) - 3412518..3412802 (-) 285 WP_007407481.1 competence protein ComFB -
  AJ82_RS16430 (AJ82_18425) comFA 3412860..3414245 (-) 1386 WP_025285354.1 DEAD/DEAH box helicase Machinery gene
  AJ82_RS16435 (AJ82_18430) - 3414354..3415202 (-) 849 WP_003151387.1 DegV family protein -
  AJ82_RS16440 (AJ82_18435) degU 3415300..3415989 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AJ82_RS16445 (AJ82_18440) degS 3416066..3417229 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AJ82_RS16450 (AJ82_18445) - 3417452..3418099 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52751.10 Da        Isoelectric Point: 10.1785

>NTDB_id=118256 AJ82_RS16430 WP_025285354.1 3412860..3414245(-) (comFA) [Bacillus velezensis TrigoCor1448]
MSEGASEFSEVRDFFYGRHLLRSDIPFSDQRIKRFTEKEYITDEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAYENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=118256 AJ82_RS16430 WP_025285354.1 3412860..3414245(-) (comFA) [Bacillus velezensis TrigoCor1448]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGATATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGACGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAGGCCTATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618

Multiple sequence alignment