Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AJ82_RS16420 Genome accession   NZ_CP007244
Coordinates   3411823..3412512 (-) Length   229 a.a.
NCBI ID   WP_199022660.1    Uniprot ID   -
Organism   Bacillus velezensis TrigoCor1448     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3406823..3417512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS16385 (AJ82_18380) fliW 3406914..3407345 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  AJ82_RS16390 (AJ82_18385) - 3407375..3407944 (-) 570 WP_007407476.1 DUF6470 family protein -
  AJ82_RS16395 (AJ82_18390) flgL 3408035..3408952 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  AJ82_RS16400 (AJ82_18395) flgK 3408964..3410481 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  AJ82_RS16405 (AJ82_18400) - 3410497..3410979 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AJ82_RS16410 (AJ82_18405) flgM 3410994..3411260 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AJ82_RS16415 (AJ82_18410) - 3411330..3411749 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  AJ82_RS16420 (AJ82_18415) comFC 3411823..3412512 (-) 690 WP_199022660.1 phosphoribosyltransferase family protein Machinery gene
  AJ82_RS16425 (AJ82_18420) - 3412518..3412802 (-) 285 WP_007407481.1 competence protein ComFB -
  AJ82_RS16430 (AJ82_18425) comFA 3412860..3414245 (-) 1386 WP_025285354.1 DEAD/DEAH box helicase Machinery gene
  AJ82_RS16435 (AJ82_18430) - 3414354..3415202 (-) 849 WP_003151387.1 DegV family protein -
  AJ82_RS16440 (AJ82_18435) degU 3415300..3415989 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AJ82_RS16445 (AJ82_18440) degS 3416066..3417229 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25243.86 Da        Isoelectric Point: 8.2927

>NTDB_id=118255 AJ82_RS16420 WP_199022660.1 3411823..3412512(-) (comFC) [Bacillus velezensis TrigoCor1448]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRRNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=118255 AJ82_RS16420 WP_199022660.1 3411823..3412512(-) (comFC) [Bacillus velezensis TrigoCor1448]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCGAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTCCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment