Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AJ82_RS11645 Genome accession   NZ_CP007244
Coordinates   2471087..2472157 (-) Length   356 a.a.
NCBI ID   WP_007612574.1    Uniprot ID   -
Organism   Bacillus velezensis TrigoCor1448     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2466087..2477157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS11595 (AJ82_13005) - 2466146..2466730 (-) 585 WP_025284996.1 signal peptidase I -
  AJ82_RS11600 (AJ82_13010) tapA 2466702..2467373 (-) 672 WP_025284997.1 amyloid fiber anchoring/assembly protein TapA -
  AJ82_RS11605 (AJ82_13015) - 2467632..2467961 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  AJ82_RS11610 (AJ82_13020) - 2468002..2468181 (-) 180 WP_003153093.1 YqzE family protein -
  AJ82_RS11615 (AJ82_13025) comGG 2468238..2468615 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  AJ82_RS11620 (AJ82_13030) comGF 2468616..2469116 (-) 501 WP_257726452.1 competence type IV pilus minor pilin ComGF -
  AJ82_RS11625 (AJ82_13035) comGE 2469025..2469339 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  AJ82_RS11630 (AJ82_13040) comGD 2469323..2469760 (-) 438 WP_025284999.1 competence type IV pilus minor pilin ComGD Machinery gene
  AJ82_RS11635 (AJ82_13045) comGC 2469750..2470016 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  AJ82_RS11640 (AJ82_13050) comGB 2470063..2471100 (-) 1038 WP_015240211.1 competence type IV pilus assembly protein ComGB Machinery gene
  AJ82_RS11645 (AJ82_13055) comGA 2471087..2472157 (-) 1071 WP_007612574.1 competence type IV pilus ATPase ComGA Machinery gene
  AJ82_RS11650 (AJ82_13065) - 2472351..2473301 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  AJ82_RS11655 (AJ82_13070) - 2473447..2474748 (+) 1302 WP_021494315.1 hemolysin family protein -
  AJ82_RS11660 (AJ82_13075) - 2474786..2475616 (-) 831 WP_025285000.1 STAS domain-containing protein -
  AJ82_RS11670 (AJ82_13085) - 2475823..2476203 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AJ82_RS11675 (AJ82_13090) - 2476441..2476686 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40530.84 Da        Isoelectric Point: 9.3437

>NTDB_id=118237 AJ82_RS11645 WP_007612574.1 2471087..2472157(-) (comGA) [Bacillus velezensis TrigoCor1448]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRETRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=118237 AJ82_RS11645 WP_007612574.1 2471087..2472157(-) (comGA) [Bacillus velezensis TrigoCor1448]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTAAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCAGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGACCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCCGCAATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGGAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

38.177

98.596

0.376

Multiple sequence alignment