Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   AJ82_RS11630 Genome accession   NZ_CP007244
Coordinates   2469323..2469760 (-) Length   145 a.a.
NCBI ID   WP_025284999.1    Uniprot ID   -
Organism   Bacillus velezensis TrigoCor1448     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2464323..2474760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS11580 (AJ82_12990) sinI 2464706..2464879 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  AJ82_RS11585 (AJ82_12995) sinR 2464913..2465248 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AJ82_RS11590 (AJ82_13000) - 2465296..2466081 (-) 786 WP_007408329.1 TasA family protein -
  AJ82_RS11595 (AJ82_13005) - 2466146..2466730 (-) 585 WP_025284996.1 signal peptidase I -
  AJ82_RS11600 (AJ82_13010) tapA 2466702..2467373 (-) 672 WP_025284997.1 amyloid fiber anchoring/assembly protein TapA -
  AJ82_RS11605 (AJ82_13015) - 2467632..2467961 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  AJ82_RS11610 (AJ82_13020) - 2468002..2468181 (-) 180 WP_003153093.1 YqzE family protein -
  AJ82_RS11615 (AJ82_13025) comGG 2468238..2468615 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  AJ82_RS11620 (AJ82_13030) comGF 2468616..2469116 (-) 501 WP_257726452.1 competence type IV pilus minor pilin ComGF -
  AJ82_RS11625 (AJ82_13035) comGE 2469025..2469339 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  AJ82_RS11630 (AJ82_13040) comGD 2469323..2469760 (-) 438 WP_025284999.1 competence type IV pilus minor pilin ComGD Machinery gene
  AJ82_RS11635 (AJ82_13045) comGC 2469750..2470016 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  AJ82_RS11640 (AJ82_13050) comGB 2470063..2471100 (-) 1038 WP_015240211.1 competence type IV pilus assembly protein ComGB Machinery gene
  AJ82_RS11645 (AJ82_13055) comGA 2471087..2472157 (-) 1071 WP_007612574.1 competence type IV pilus ATPase ComGA Machinery gene
  AJ82_RS11650 (AJ82_13065) - 2472351..2473301 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  AJ82_RS11655 (AJ82_13070) - 2473447..2474748 (+) 1302 WP_021494315.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16275.76 Da        Isoelectric Point: 10.2475

>NTDB_id=118234 AJ82_RS11630 WP_025284999.1 2469323..2469760(-) (comGD) [Bacillus velezensis TrigoCor1448]
MNNNRRIENGFTLLESLIVLSLASVLLTVLFTTVPPAYTHLAVRQKTEQLQKDIQLAQETAIAENKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=118234 AJ82_RS11630 WP_025284999.1 2469323..2469760(-) (comGD) [Bacillus velezensis TrigoCor1448]
TTGAACAATAACAGGCGGATAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAAAATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGTGGAAGGATTGTCGAGCGTTCTTTTGACTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACGGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.849

100

0.572

Multiple sequence alignment