Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KHU1_RS18050 Genome accession   NZ_CP007242
Coordinates   3759957..3760475 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus amyloliquefaciens KHG19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3754957..3765475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS18020 (KHU1_3522) - 3756156..3756536 (-) 381 WP_015418645.1 VOC family protein -
  KHU1_RS18025 (KHU1_3523) - 3756588..3757532 (-) 945 WP_007409892.1 LacI family DNA-binding transcriptional regulator -
  KHU1_RS18030 (KHU1_3524) xth 3757595..3758353 (-) 759 WP_020958116.1 exodeoxyribonuclease III -
  KHU1_RS18035 (KHU1_3525) - 3758350..3758907 (-) 558 WP_020958117.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  KHU1_RS18040 (KHU1_3526) - 3758904..3759485 (-) 582 WP_020958118.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  KHU1_RS18045 (KHU1_3527) rpsR 3759674..3759913 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  KHU1_RS18050 (KHU1_3528) ssbA 3759957..3760475 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  KHU1_RS18055 (KHU1_3529) rpsF 3760515..3760802 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  KHU1_RS18060 (KHU1_3530) ychF 3760914..3762014 (-) 1101 WP_042635675.1 redox-regulated ATPase YchF -
  KHU1_RS18065 (KHU1_3531) - 3762141..3764144 (-) 2004 WP_042635676.1 molybdopterin-dependent oxidoreductase -
  KHU1_RS18070 (KHU1_3532) - 3764191..3764397 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=118179 KHU1_RS18050 WP_004392979.1 3759957..3760475(-) (ssbA) [Bacillus amyloliquefaciens KHG19]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=118179 KHU1_RS18050 WP_004392979.1 3759957..3760475(-) (ssbA) [Bacillus amyloliquefaciens KHG19]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTCACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment