Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KHU1_RS18050 Genome accession   NZ_CP007242
Coordinates   3759957..3760475 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus amyloliquefaciens KHG19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3759957..3806102 3759957..3760475 within 0


Gene organization within MGE regions


Location: 3759957..3806102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS18050 (KHU1_3528) ssbA 3759957..3760475 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  KHU1_RS18055 (KHU1_3529) rpsF 3760515..3760802 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  KHU1_RS18060 (KHU1_3530) ychF 3760914..3762014 (-) 1101 WP_042635675.1 redox-regulated ATPase YchF -
  KHU1_RS18065 (KHU1_3531) - 3762141..3764144 (-) 2004 WP_042635676.1 molybdopterin-dependent oxidoreductase -
  KHU1_RS18070 (KHU1_3532) - 3764191..3764397 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  KHU1_RS18075 (KHU1_3533) - 3764483..3765508 (-) 1026 WP_088005468.1 hypothetical protein -
  KHU1_RS18080 (KHU1_3534) - 3765652..3766155 (+) 504 WP_042635677.1 GNAT family N-acetyltransferase -
  KHU1_RS18085 (KHU1_3535) yyaC 3766329..3766943 (+) 615 WP_004392969.1 spore protease YyaC -
  KHU1_RS18090 (KHU1_3536) - 3766973..3767824 (-) 852 WP_004392966.1 ParB/RepB/Spo0J family partition protein -
  KHU1_RS18095 (KHU1_3537) soj 3767817..3768578 (-) 762 WP_007409899.1 sporulation initiation inhibitor protein Soj -
  KHU1_RS18100 (KHU1_3538) noc 3768877..3769728 (-) 852 WP_007409900.1 nucleoid occlusion protein -
  KHU1_RS18105 (KHU1_3539) rsmG 3769850..3770569 (-) 720 WP_007409901.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  KHU1_RS18110 (KHU1_3540) mnmG 3770583..3772469 (-) 1887 WP_007615086.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  KHU1_RS18115 (KHU1_3541) mnmE 3772486..3773865 (-) 1380 WP_007409903.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  KHU1_RS18120 (KHU1_3542) jag 3774155..3774796 (-) 642 WP_020958121.1 RNA-binding cell elongation regulator Jag/EloR -
  KHU1_RS18125 (KHU1_3543) spoIIIJ 3774793..3775542 (-) 750 WP_007409906.1 YidC family membrane integrase SpoIIIJ -
  KHU1_RS18130 (KHU1_3544) rnpA 3775703..3776053 (-) 351 WP_004392944.1 ribonuclease P protein component -
  KHU1_RS19685 rpmH 3776207..3776341 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  KHU1_RS18140 (KHU1_3546) dnaA 3776964..3778304 (+) 1341 WP_007409908.1 chromosomal replication initiator protein DnaA -
  KHU1_RS18145 (KHU1_3547) dnaN 3778489..3779625 (+) 1137 WP_014416704.1 DNA polymerase III subunit beta -
  KHU1_RS18150 (KHU1_3548) rlbA 3779760..3779975 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  KHU1_RS18155 (KHU1_3549) recF 3779991..3781103 (+) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  KHU1_RS18160 (KHU1_3550) remB 3781121..3781366 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  KHU1_RS18165 (KHU1_3551) gyrB 3781423..3783339 (+) 1917 WP_014720600.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  KHU1_RS18170 (KHU1_3552) gyrA 3783555..3786014 (+) 2460 WP_015239009.1 DNA gyrase subunit A -
  KHU1_RS18190 (KHU1_3553) - 3791179..3792129 (-) 951 WP_042635750.1 YaaC family protein -
  KHU1_RS18195 (KHU1_3554) guaB 3792250..3793716 (+) 1467 WP_007408741.1 IMP dehydrogenase -
  KHU1_RS18200 (KHU1_3555) dacA 3793869..3795200 (+) 1332 WP_015239011.1 D-alanyl-D-alanine carboxypeptidase -
  KHU1_RS18205 (KHU1_3556) pdxS 3795398..3796282 (+) 885 WP_003150714.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  KHU1_RS18210 (KHU1_3557) pdxT 3796304..3796894 (+) 591 WP_007615126.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  KHU1_RS18215 (KHU1_3558) serS 3797214..3798491 (+) 1278 WP_042635679.1 serine--tRNA ligase -
  KHU1_RS18220 (KHU1_3559) - 3798502..3799647 (-) 1146 WP_015239012.1 glycerate kinase -
  KHU1_RS18230 (KHU1_3560) dck 3800088..3800741 (-) 654 WP_007408746.1 deoxyadenosine/deoxycytidine kinase -
  KHU1_RS18235 (KHU1_3561) dgk 3800738..3801361 (-) 624 WP_007408747.1 deoxyguanosine kinase -
  KHU1_RS18240 (KHU1_3562) - 3801457..3802740 (-) 1284 WP_032868303.1 glycoside hydrolase family 18 protein -
  KHU1_RS18245 (KHU1_3563) - 3802812..3803363 (-) 552 WP_007408750.1 cysteine hydrolase family protein -
  KHU1_RS18250 (KHU1_3564) tadA 3803446..3803928 (+) 483 WP_007408751.1 tRNA adenosine(34) deaminase TadA -
  KHU1_RS18255 (KHU1_3565) dnaX 3804411..3806102 (+) 1692 WP_007408753.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=118179 KHU1_RS18050 WP_004392979.1 3759957..3760475(-) (ssbA) [Bacillus amyloliquefaciens KHG19]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=118179 KHU1_RS18050 WP_004392979.1 3759957..3760475(-) (ssbA) [Bacillus amyloliquefaciens KHG19]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTCACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment