Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AW43_RS06980 | Genome accession | NZ_CP007205 |
| Coordinates | 1495630..1496130 (+) | Length | 166 a.a. |
| NCBI ID | WP_005725039.1 | Uniprot ID | A0A379BD60 |
| Organism | Pasteurella multocida subsp. multocida PMTB2.1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1490630..1501130
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AW43_RS06965 (AW43_07145) | rlmB | 1491173..1491910 (+) | 738 | WP_005725044.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| AW43_RS06970 (AW43_07150) | sodC | 1491996..1492556 (-) | 561 | WP_005725042.1 | superoxide dismutase family protein | - |
| AW43_RS06975 (AW43_07155) | uvrA | 1492627..1495458 (-) | 2832 | WP_061406255.1 | excinuclease ABC subunit UvrA | - |
| AW43_RS06980 (AW43_07160) | ssb | 1495630..1496130 (+) | 501 | WP_005725039.1 | single-stranded DNA-binding protein | Machinery gene |
| AW43_RS06990 (AW43_07170) | folD | 1496638..1497492 (-) | 855 | WP_005725034.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| AW43_RS07005 (AW43_07185) | - | 1498135..1498554 (+) | 420 | WP_005719426.1 | DUF417 family protein | - |
| AW43_RS07010 (AW43_07190) | lipA | 1498632..1499594 (-) | 963 | WP_005725033.1 | lipoyl synthase | - |
| AW43_RS07015 (AW43_07195) | lipB | 1499659..1500315 (-) | 657 | WP_005725032.1 | lipoyl(octanoyl) transferase LipB | - |
| AW43_RS07020 (AW43_07200) | ybeD | 1500322..1500618 (-) | 297 | WP_005719420.1 | DUF493 family protein YbeD | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18657.68 Da Isoelectric Point: 5.3353
>NTDB_id=117718 AW43_RS06980 WP_005725039.1 1495630..1496130(+) (ssb) [Pasteurella multocida subsp. multocida PMTB2.1]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF
Nucleotide
Download Length: 501 bp
>NTDB_id=117718 AW43_RS06980 WP_005725039.1 1495630..1496130(+) (ssb) [Pasteurella multocida subsp. multocida PMTB2.1]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
69.231 |
100 |
0.759 |
| ssb | Vibrio cholerae strain A1552 |
53.591 |
100 |
0.584 |
| ssb | Neisseria meningitidis MC58 |
44.068 |
100 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
44.068 |
100 |
0.47 |