Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DYB47_RS08225 Genome accession   NZ_UHFV01000002
Coordinates   1640186..1640680 (-) Length   164 a.a.
NCBI ID   WP_003081501.1    Uniprot ID   G5JXG8
Organism   Streptococcus macacae NCTC 11558     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1635186..1645680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS08205 (NCTC11558_01665) - 1636831..1637775 (+) 945 WP_003078759.1 magnesium transporter CorA family protein -
  DYB47_RS08210 (NCTC11558_01666) - 1638197..1638862 (+) 666 WP_003081038.1 DUF1129 domain-containing protein -
  DYB47_RS08215 (NCTC11558_01667) hdrM 1638949..1639641 (+) 693 WP_003082374.1 hypothetical protein Regulator
  DYB47_RS08220 (NCTC11558_01668) rpsR 1639797..1640036 (-) 240 WP_003080521.1 30S ribosomal protein S18 -
  DYB47_RS08225 (NCTC11558_01669) ssbA 1640186..1640680 (-) 495 WP_003081501.1 single-stranded DNA-binding protein Machinery gene
  DYB47_RS08230 (NCTC11558_01670) rpsF 1640695..1640985 (-) 291 WP_003079004.1 30S ribosomal protein S6 -
  DYB47_RS08235 (NCTC11558_01671) mutY 1641949..1643106 (+) 1158 WP_003080711.1 A/G-specific adenine glycosylase -
  DYB47_RS08240 (NCTC11558_01672) trxA 1643218..1643535 (-) 318 WP_003082390.1 thioredoxin -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18399.06 Da        Isoelectric Point: 4.7187

>NTDB_id=1171335 DYB47_RS08225 WP_003081501.1 1640186..1640680(-) (ssbA) [Streptococcus macacae NCTC 11558]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRAARENQSSSYNAGNNNFSGNDFSSQSAPSQSQAPNFGRDENPFGNSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1171335 DYB47_RS08225 WP_003081501.1 1640186..1640680(-) (ssbA) [Streptococcus macacae NCTC 11558]
ATGATTAATAATGTCGTACTGGTTGGCCGCATGACACGTGATGCAGAGCTTCGTTATACGCCAAGTAACCAAGCAGTCGC
AACTTTCACTCTGGCGGTTAATCGTAATTTCAAAAACCAAAATGGTGAACGTGAAGCTGATTTCATTAATATCGTTATTT
GGCGTCAGCAGGCTGAAAATTTGGCCAATTGGGCTAAAAAGGGCACGCTTCTTGGTATTACAGGCCGTATTCAGACGCGT
AATTATGAAAACCAGCAGGGTCAGCGTGTTTATGTTACAGAGGTTGTTGCGGACAATTTCCAAATTTTGGAAAGCCGGGC
TGCGCGTGAGAATCAGTCTAGCAGCTATAATGCTGGTAACAATAATTTCAGCGGAAATGATTTTTCATCTCAGTCCGCTC
CTTCACAATCGCAAGCACCAAACTTTGGCAGAGATGAGAATCCATTTGGTAACTCAAATCCAATGGATATCTCTGATGAT
GATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JXG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.303

100

0.622
  ssb Latilactobacillus sakei subsp. sakei 23K

58.824

100

0.61

Multiple sequence alignment