Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrM   Type   Regulator
Locus tag   DYB47_RS08215 Genome accession   NZ_UHFV01000002
Coordinates   1638949..1639641 (+) Length   230 a.a.
NCBI ID   WP_003082374.1    Uniprot ID   -
Organism   Streptococcus macacae NCTC 11558     
Function   repress competence development; negative regulate HdrR activity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633949..1644641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS08205 (NCTC11558_01665) - 1636831..1637775 (+) 945 WP_003078759.1 magnesium transporter CorA family protein -
  DYB47_RS08210 (NCTC11558_01666) - 1638197..1638862 (+) 666 WP_003081038.1 DUF1129 domain-containing protein -
  DYB47_RS08215 (NCTC11558_01667) hdrM 1638949..1639641 (+) 693 WP_003082374.1 hypothetical protein Regulator
  DYB47_RS08220 (NCTC11558_01668) rpsR 1639797..1640036 (-) 240 WP_003080521.1 30S ribosomal protein S18 -
  DYB47_RS08225 (NCTC11558_01669) ssbA 1640186..1640680 (-) 495 WP_003081501.1 single-stranded DNA-binding protein Machinery gene
  DYB47_RS08230 (NCTC11558_01670) rpsF 1640695..1640985 (-) 291 WP_003079004.1 30S ribosomal protein S6 -
  DYB47_RS08235 (NCTC11558_01671) mutY 1641949..1643106 (+) 1158 WP_003080711.1 A/G-specific adenine glycosylase -
  DYB47_RS08240 (NCTC11558_01672) trxA 1643218..1643535 (-) 318 WP_003082390.1 thioredoxin -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25995.22 Da        Isoelectric Point: 8.0439

>NTDB_id=1171334 DYB47_RS08215 WP_003082374.1 1638949..1639641(+) (hdrM) [Streptococcus macacae NCTC 11558]
MKKGYIWYLLLAALACYFIVTAFFPALHLVFNTMLILAIAFILMGLGSRSAILAFIGLGFLSIYLKDTFHFHYSIGPLFA
GLVLIGVIINGILKPRYSYHYKKYFNPYFEGNKRTYDSDDEANIYLKTLFSENMSYITSQQISHLFITTKFGGQYVDLSQ
AQFMTDSPEIHLDVSFADTTIRIPSHWKIINKASSPFATISFSGYPSTEDQQITVLLTGTVAMGTVNIQY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=1171334 DYB47_RS08215 WP_003082374.1 1638949..1639641(+) (hdrM) [Streptococcus macacae NCTC 11558]
ATGAAAAAAGGATACATTTGGTATTTATTACTTGCTGCTTTAGCCTGTTATTTTATAGTTACAGCTTTTTTTCCTGCTTT
GCATCTAGTGTTTAACACTATGCTTATATTGGCTATCGCCTTTATACTAATGGGATTAGGTAGTAGGAGTGCTATTTTAG
CCTTCATCGGTCTAGGCTTTTTGAGTATCTATCTAAAAGATACCTTTCATTTTCACTACTCAATAGGACCGCTATTTGCC
GGGCTGGTTCTTATAGGAGTCATCATCAACGGTATCTTAAAACCGCGTTACTCCTATCATTATAAGAAATATTTCAATCC
TTATTTTGAAGGGAATAAAAGAACTTATGATAGTGATGATGAGGCAAACATCTATCTTAAAACCCTCTTTTCAGAAAATA
TGAGTTATATCACCTCTCAGCAAATAAGCCATCTATTTATCACTACTAAATTTGGAGGCCAGTATGTAGATCTATCTCAG
GCACAATTTATGACGGATTCTCCTGAAATTCATTTAGATGTTAGCTTTGCTGATACAACTATTCGGATTCCAAGTCATTG
GAAGATCATCAATAAGGCAAGTTCTCCTTTTGCAACCATTTCTTTTTCAGGTTATCCAAGCACAGAGGATCAGCAAATAA
CGGTCCTTCTAACAGGAACAGTAGCTATGGGAACTGTCAACATTCAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrM Streptococcus mutans UA159

60.87

100

0.609

Multiple sequence alignment