Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   DYB47_RS05375 Genome accession   NZ_UHFV01000002
Coordinates   1040173..1040862 (-) Length   229 a.a.
NCBI ID   WP_003081044.1    Uniprot ID   G5JVF0
Organism   Streptococcus macacae NCTC 11558     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1035173..1045862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS05345 (NCTC11558_01079) - 1035263..1035541 (-) 279 WP_003079640.1 UPF0223 family protein -
  DYB47_RS05350 (NCTC11558_01080) - 1035534..1035950 (-) 417 WP_040841493.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  DYB47_RS05355 (NCTC11558_01081) - 1036010..1036930 (-) 921 WP_040841759.1 bifunctional riboflavin kinase/FAD synthetase -
  DYB47_RS05360 (NCTC11558_01082) truB 1036952..1037830 (-) 879 WP_003082270.1 tRNA pseudouridine(55) synthase TruB -
  DYB47_RS05365 (NCTC11558_01083) - 1037827..1038663 (-) 837 WP_003080357.1 alpha/beta fold hydrolase -
  DYB47_RS05370 (NCTC11558_01084) scnK 1038796..1040172 (-) 1377 WP_003078662.1 sensor histidine kinase Regulator
  DYB47_RS05375 (NCTC11558_01085) scnR 1040173..1040862 (-) 690 WP_003081044.1 response regulator transcription factor Regulator
  DYB47_RS05380 (NCTC11558_01086) - 1041036..1041941 (+) 906 WP_003080670.1 ABC transporter ATP-binding protein -
  DYB47_RS05385 (NCTC11558_01087) - 1041941..1042681 (+) 741 WP_003078923.1 ABC transporter permease -
  DYB47_RS05390 (NCTC11558_01088) - 1042678..1043406 (+) 729 WP_003082420.1 ABC transporter permease -
  DYB47_RS05395 (NCTC11558_01089) - 1043476..1044840 (-) 1365 WP_003080619.1 DUF438 domain-containing protein -
  DYB47_RS05400 (NCTC11558_01090) - 1044840..1045073 (-) 234 WP_003081959.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26099.37 Da        Isoelectric Point: 6.0515

>NTDB_id=1171320 DYB47_RS05375 WP_003081044.1 1040173..1040862(-) (scnR) [Streptococcus macacae NCTC 11558]
MNYKEKKILVLDDNPEILKMVQESLSIAGFSNLTSVQSQKEALEQFAEKSFDLAILDIMLPEGSGFEVLKGIRKTSTIPI
LFLSAISDIEKQYQGFELGADDYIVKPFRPRDLELRILSILKRTYPENDEVLVLPTCQVNFSQALITKGELEIQLTAKEY
SILKVLYDNKNRIVTFDQLLEKVWGPPYQGYENTLMAHIRKIRQKIEANPSKPESLLTIKGLGYKLKVG

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1171320 DYB47_RS05375 WP_003081044.1 1040173..1040862(-) (scnR) [Streptococcus macacae NCTC 11558]
ATGAACTATAAAGAGAAAAAGATCTTAGTTTTAGACGATAATCCAGAAATTTTAAAAATGGTGCAAGAATCTTTGAGTAT
TGCTGGCTTTAGCAATCTAACAAGTGTGCAGTCACAAAAGGAGGCTTTAGAGCAATTTGCAGAAAAATCCTTTGATTTAG
CTATTTTAGATATTATGCTGCCTGAAGGGTCAGGTTTTGAAGTCTTAAAAGGTATCCGTAAGACATCAACAATTCCTATT
TTATTTTTATCAGCCATTTCAGATATTGAAAAACAGTATCAAGGTTTTGAGTTGGGAGCAGATGATTATATTGTTAAACC
TTTTCGCCCAAGAGATTTGGAGCTGCGAATTCTTTCGATCTTAAAAAGAACCTATCCTGAAAATGACGAAGTCCTTGTTT
TACCGACTTGTCAGGTGAATTTTAGTCAAGCTCTGATTACTAAAGGGGAATTAGAGATTCAGCTGACAGCTAAGGAGTAT
AGTATTCTTAAGGTTTTATATGACAATAAAAATCGTATTGTGACCTTTGATCAACTCTTAGAAAAAGTTTGGGGACCGCC
ATATCAGGGTTATGAAAATACTCTAATGGCTCATATTCGCAAGATTCGACAAAAAATTGAAGCCAACCCTTCTAAGCCAG
AAAGCTTACTAACCATTAAAGGTCTAGGCTACAAACTAAAGGTGGGTTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JVF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

86.9

100

0.869
  micA Streptococcus pneumoniae Cp1015

39.655

100

0.402
  vicR Streptococcus mutans UA159

37.607

100

0.384

Multiple sequence alignment