Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnK   Type   Regulator
Locus tag   DYB47_RS05370 Genome accession   NZ_UHFV01000002
Coordinates   1038796..1040172 (-) Length   458 a.a.
NCBI ID   WP_003078662.1    Uniprot ID   G5JVE9
Organism   Streptococcus macacae NCTC 11558     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033796..1045172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS05340 (NCTC11558_01078) - 1034515..1035273 (-) 759 WP_003081177.1 inositol monophosphatase family protein -
  DYB47_RS05345 (NCTC11558_01079) - 1035263..1035541 (-) 279 WP_003079640.1 UPF0223 family protein -
  DYB47_RS05350 (NCTC11558_01080) - 1035534..1035950 (-) 417 WP_040841493.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  DYB47_RS05355 (NCTC11558_01081) - 1036010..1036930 (-) 921 WP_040841759.1 bifunctional riboflavin kinase/FAD synthetase -
  DYB47_RS05360 (NCTC11558_01082) truB 1036952..1037830 (-) 879 WP_003082270.1 tRNA pseudouridine(55) synthase TruB -
  DYB47_RS05365 (NCTC11558_01083) - 1037827..1038663 (-) 837 WP_003080357.1 alpha/beta fold hydrolase -
  DYB47_RS05370 (NCTC11558_01084) scnK 1038796..1040172 (-) 1377 WP_003078662.1 sensor histidine kinase Regulator
  DYB47_RS05375 (NCTC11558_01085) scnR 1040173..1040862 (-) 690 WP_003081044.1 response regulator transcription factor Regulator
  DYB47_RS05380 (NCTC11558_01086) - 1041036..1041941 (+) 906 WP_003080670.1 ABC transporter ATP-binding protein -
  DYB47_RS05385 (NCTC11558_01087) - 1041941..1042681 (+) 741 WP_003078923.1 ABC transporter permease -
  DYB47_RS05390 (NCTC11558_01088) - 1042678..1043406 (+) 729 WP_003082420.1 ABC transporter permease -
  DYB47_RS05395 (NCTC11558_01089) - 1043476..1044840 (-) 1365 WP_003080619.1 DUF438 domain-containing protein -
  DYB47_RS05400 (NCTC11558_01090) - 1044840..1045073 (-) 234 WP_003081959.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 52766.46 Da        Isoelectric Point: 9.6803

>NTDB_id=1171319 DYB47_RS05370 WP_003078662.1 1038796..1040172(-) (scnK) [Streptococcus macacae NCTC 11558]
MDSVKFFTKLLTKYVLLIFALIIGFVFVYGLIFLTYLSHYGNENPELLYTKIAQSSQQNNFLFDKSSRKEMNKQKTWAMV
LNQDGNIVQSYHLPKQLKRHYTNTDLVKFSRWYLEDYPVFSYVRGQQILVLGYPKKPKKHSLAKFNLYANTQFIRNCLIL
VPVFLGIILLLIFILLSRSKLRIKKEMKPIVAAVASLSQGQNVALNEKGNLSEIKAALNETSHILEESYLMKEQWIRGVS
HDLRNPLMLISGYTSQLEQQYGRGKKIEQIENQIQNMQEMISNLNLSYLLDNQKHHSDFSNLDLVVVLRTVIADILNNYD
TITLHFDLPAEAVLIKGDAILLERAFRNLLLNSIMHSSSNQIDLTYQLVENKVLIIIADQGDITAEKITELNQKSTNYET
HGMGTVITKQIIKLHQGETIFSDNHPGLKVTIALPLIEEQIIIKMNRYKVSEKSRRVL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1171319 DYB47_RS05370 WP_003078662.1 1038796..1040172(-) (scnK) [Streptococcus macacae NCTC 11558]
ATGGATAGCGTTAAATTTTTTACTAAGTTATTAACCAAGTATGTTTTATTAATCTTTGCTTTAATCATAGGATTTGTTTT
TGTATATGGTTTGATTTTTTTAACTTATCTTAGCCATTATGGAAATGAAAATCCGGAACTGCTCTACACCAAAATTGCTC
AATCAAGTCAACAGAATAATTTCCTTTTTGATAAAAGCAGCCGAAAAGAAATGAATAAACAAAAGACTTGGGCTATGGTG
CTGAATCAAGATGGCAATATTGTCCAATCTTATCATTTACCTAAACAGCTTAAAAGACATTATACCAACACTGATCTAGT
GAAATTTTCACGCTGGTATTTAGAAGATTACCCTGTTTTCTCCTATGTACGCGGTCAGCAGATTTTAGTTTTGGGCTATC
CTAAAAAGCCTAAAAAGCATTCCTTAGCAAAATTTAACCTCTATGCTAATACGCAATTTATCAGGAATTGTCTTATTTTA
GTACCTGTTTTCTTAGGTATTATTCTTTTACTGATTTTTATTCTTTTGAGCCGATCAAAACTGCGCATTAAAAAGGAGAT
GAAGCCGATCGTTGCTGCTGTTGCGTCTTTATCTCAGGGTCAAAATGTGGCTCTTAATGAAAAAGGCAACCTCTCTGAAA
TTAAGGCAGCTCTCAATGAAACATCTCATATTTTGGAAGAAAGCTATCTGATGAAAGAGCAGTGGATTAGAGGCGTTAGC
CATGATTTACGCAATCCGCTTATGTTAATTTCAGGCTATACTAGTCAGCTAGAACAGCAGTATGGCAGAGGAAAGAAAAT
TGAACAAATTGAAAATCAGATTCAAAACATGCAAGAAATGATTTCTAATCTCAATTTGAGCTATTTATTGGATAACCAAA
AGCATCATTCTGACTTTTCCAATCTTGATTTGGTTGTTGTCCTACGAACAGTGATTGCTGATATTCTAAATAATTATGAC
ACTATAACACTTCATTTTGATTTACCTGCTGAGGCAGTATTAATAAAGGGGGATGCTATTTTACTAGAAAGAGCTTTCAG
GAATCTCCTGCTTAATAGTATTATGCATAGCAGCTCTAACCAGATTGATTTAACCTATCAATTAGTTGAGAACAAAGTGC
TCATCATCATTGCGGATCAAGGAGATATTACAGCTGAAAAAATTACAGAACTGAATCAAAAATCGACCAATTATGAGACG
CATGGCATGGGGACAGTTATCACTAAGCAGATTATTAAATTACACCAAGGAGAAACGATCTTTTCAGACAATCATCCCGG
TTTAAAGGTGACAATTGCTTTACCTTTAATAGAAGAACAAATTATTATTAAAATGAACCGATATAAAGTAAGCGAAAAAA
GCAGACGAGTTCTTTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(231-286)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(337-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JVE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

80.866

95.852

0.775

Multiple sequence alignment