Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DYB47_RS04590 Genome accession   NZ_UHFV01000002
Coordinates   871647..872081 (+) Length   144 a.a.
NCBI ID   WP_003078644.1    Uniprot ID   G5JU24
Organism   Streptococcus macacae NCTC 11558     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 866647..877081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS04580 (NCTC11558_00925) - 869173..869679 (-) 507 WP_003079140.1 DUF308 domain-containing protein -
  DYB47_RS09880 - 869725..869859 (-) 135 WP_268741100.1 hypothetical protein -
  DYB47_RS04585 (NCTC11558_00926) gdhA 869989..871338 (+) 1350 WP_003082376.1 NADP-specific glutamate dehydrogenase -
  DYB47_RS04590 (NCTC11558_00927) rcrR 871647..872081 (+) 435 WP_003078644.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DYB47_RS04595 (NCTC11558_00928) rcrP 872085..873890 (+) 1806 WP_003080340.1 ABC transporter ATP-binding protein Regulator
  DYB47_RS04600 (NCTC11558_00929) rcrQ 873880..875637 (+) 1758 WP_003081868.1 ABC transporter ATP-binding protein Regulator
  DYB47_RS09680 - 875911..876059 (+) 149 Protein_851 ComC/BlpC family peptide pheromone/bacteriocin -
  DYB47_RS04605 (NCTC11558_00930) - 876131..876556 (+) 426 WP_003081483.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16523.21 Da        Isoelectric Point: 9.7672

>NTDB_id=1171312 DYB47_RS04590 WP_003078644.1 871647..872081(+) (rcrR) [Streptococcus macacae NCTC 11558]
MKEPLGQFRILLNTIENRVQEISKGYDIESLAGPQGSTVVFLLKNQDQELFIKDIEKELQVSKSVASNLVKRMQKNGFVK
IIPSLSDKRRKQVVLTPFGLEKAKEMQFFLNDIYDAVLADIKPEELAVAKKVFRQIQSNLENRE

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1171312 DYB47_RS04590 WP_003078644.1 871647..872081(+) (rcrR) [Streptococcus macacae NCTC 11558]
ATGAAAGAACCTTTAGGTCAATTTAGAATTTTATTAAATACCATTGAAAACAGAGTTCAGGAAATTTCTAAAGGTTATGA
CATTGAATCATTAGCTGGACCTCAGGGTTCTACAGTGGTATTCTTACTAAAAAATCAGGATCAAGAGCTTTTCATTAAGG
ATATTGAAAAAGAACTCCAAGTTTCTAAATCAGTTGCCAGCAATTTAGTGAAACGCATGCAAAAAAATGGCTTTGTTAAG
ATTATTCCATCCCTAAGTGATAAACGTCGTAAGCAAGTCGTTTTAACGCCATTTGGTTTAGAAAAAGCAAAAGAAATGCA
GTTCTTTCTTAATGACATTTATGATGCCGTTTTAGCTGATATCAAACCTGAAGAATTAGCTGTTGCTAAGAAAGTTTTCA
GGCAAATTCAAAGTAATTTAGAAAATAGGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(39-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JU24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

55.556

100

0.556

Multiple sequence alignment