Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   DYB47_RS04595 Genome accession   NZ_UHFV01000002
Coordinates   872085..873890 (+) Length   601 a.a.
NCBI ID   WP_003080340.1    Uniprot ID   G5JU25
Organism   Streptococcus macacae NCTC 11558     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 867085..878890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS04580 (NCTC11558_00925) - 869173..869679 (-) 507 WP_003079140.1 DUF308 domain-containing protein -
  DYB47_RS09880 - 869725..869859 (-) 135 WP_268741100.1 hypothetical protein -
  DYB47_RS04585 (NCTC11558_00926) gdhA 869989..871338 (+) 1350 WP_003082376.1 NADP-specific glutamate dehydrogenase -
  DYB47_RS04590 (NCTC11558_00927) rcrR 871647..872081 (+) 435 WP_003078644.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DYB47_RS04595 (NCTC11558_00928) rcrP 872085..873890 (+) 1806 WP_003080340.1 ABC transporter ATP-binding protein Regulator
  DYB47_RS04600 (NCTC11558_00929) rcrQ 873880..875637 (+) 1758 WP_003081868.1 ABC transporter ATP-binding protein Regulator
  DYB47_RS09680 - 875911..876059 (+) 149 Protein_851 ComC/BlpC family peptide pheromone/bacteriocin -
  DYB47_RS04605 (NCTC11558_00930) - 876131..876556 (+) 426 WP_003081483.1 hypothetical protein -
  DYB47_RS04610 (NCTC11558_00931) - 876756..877379 (+) 624 WP_003079117.1 GTP pyrophosphokinase -
  DYB47_RS04615 (NCTC11558_00932) - 877381..878082 (+) 702 WP_003080903.1 response regulator transcription factor -

Sequence


Protein


Download         Length: 601 a.a.        Molecular weight: 66966.67 Da        Isoelectric Point: 9.6700

>NTDB_id=1171313 DYB47_RS04595 WP_003080340.1 872085..873890(+) (rcrP) [Streptococcus macacae NCTC 11558]
MFKIFKRLNAKEWGMILLSTVFICLAVWMDLKTPEYMSNITTLLQTKGTKVSDIMDPGSKMLFFSFGSFFMAILVGFLAS
RTAASFTTRLRSSIFNQVMDYSEAEIKKFSIPSLLTRTTNDLTQLQILITMGMQVVTRGPIMAVWALTKIWGKNDKWTAA
VGVAVFVVFILLSVLMFVAFPRQRKVQGLTDDLNGTTRESLTGVRVVRAYNAEDYQDAKFKEENKNLTKLNLFVYRLMSL
MNPVMTVVSGGLTLAIYWVGSYIINDVKVSAVNAAAAAGAVKERVSIFSDMVVFSSYAMQVVIGFMMMVAIFIILPRALV
SAKRINEVLALNTTVQFKEKTQGNTEGRKGEIEFHNVSFRYSKNSRAVVERVSFKANTGDTVAFIGSTGSGKSTLVNLIP
RFYDATDGWIKIDGIKIENYSHNDLNNKVGYIPQSAVLFSGTVRSNIEFGKSLQSPLDDTAIWEALELAQAKDFVEAKEK
GLDTEVAQAGTNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILREELAKKTGQMTKLIVAQRISTIMDADQI
IVLDKGKVVGQGTHEELLADNNIYQEIAYSQLSKEELENEK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1171313 DYB47_RS04595 WP_003080340.1 872085..873890(+) (rcrP) [Streptococcus macacae NCTC 11558]
ATGTTTAAAATTTTTAAACGTTTAAATGCCAAGGAATGGGGCATGATTCTTCTTAGTACTGTTTTTATCTGTTTAGCTGT
TTGGATGGATTTAAAAACACCGGAGTACATGTCAAATATCACGACTTTATTGCAGACTAAGGGAACCAAGGTTTCAGATA
TTATGGATCCTGGCTCTAAGATGCTGTTTTTCTCTTTTGGAAGTTTCTTTATGGCTATCTTGGTAGGTTTTTTAGCTTCC
AGAACAGCAGCAAGTTTTACAACACGGCTTCGTTCCAGCATTTTTAATCAAGTTATGGACTATTCAGAAGCAGAGATTAA
AAAGTTTTCAATTCCTAGTTTATTAACACGTACGACTAATGACTTAACACAGTTGCAAATCCTGATTACCATGGGAATGC
AAGTTGTTACCCGCGGTCCCATTATGGCTGTTTGGGCTTTAACAAAGATTTGGGGTAAAAATGATAAGTGGACAGCTGCT
GTTGGTGTTGCAGTCTTTGTTGTCTTTATTTTATTATCTGTTTTAATGTTTGTGGCCTTTCCAAGACAGCGTAAAGTACA
AGGTCTGACAGATGACTTAAATGGTACAACCCGCGAATCTCTTACAGGTGTTCGGGTAGTTCGTGCTTATAATGCTGAAG
ATTATCAGGATGCCAAATTTAAAGAAGAAAATAAAAATTTAACAAAATTAAACTTATTTGTTTACCGTCTGATGTCCTTG
ATGAATCCTGTTATGACTGTTGTATCAGGAGGATTGACCCTGGCCATTTATTGGGTTGGATCTTACATTATTAACGATGT
AAAAGTTTCTGCAGTCAATGCAGCTGCAGCGGCTGGAGCCGTTAAAGAACGTGTTTCAATCTTTAGTGATATGGTTGTTT
TTTCTTCCTACGCCATGCAGGTGGTCATTGGTTTTATGATGATGGTCGCTATTTTTATCATTCTTCCGCGTGCTCTTGTT
TCTGCTAAACGTATCAATGAGGTTTTAGCTCTAAATACGACTGTACAGTTTAAGGAAAAGACTCAAGGAAATACAGAAGG
CAGAAAAGGTGAAATTGAGTTTCATAATGTTTCTTTCCGCTATAGCAAAAATTCCAGAGCTGTGGTTGAGCGTGTATCAT
TTAAGGCTAATACTGGAGATACAGTAGCCTTTATTGGTTCAACAGGATCTGGGAAATCAACGCTGGTCAACTTGATTCCA
CGTTTTTATGATGCGACTGATGGATGGATTAAGATTGACGGTATAAAGATAGAAAACTATTCCCACAATGATCTGAATAA
TAAAGTGGGTTATATCCCGCAAAGTGCCGTACTATTTAGCGGAACTGTCCGATCTAATATTGAATTTGGTAAGAGTCTTC
AATCTCCTTTAGATGATACTGCCATTTGGGAAGCACTTGAACTTGCTCAGGCAAAAGATTTTGTAGAAGCTAAAGAAAAA
GGCTTGGATACAGAAGTGGCTCAAGCTGGAACTAATTTTTCCGGCGGTCAGAAACAGCGTTTGGCTATTGCGAGAGCCTT
AGCACGTAAACCTGAAATTTTGATTTTTGATGATTCTTTCTCAGCCCTTGATTATAAAACCGATAGAATTTTACGTGAAG
AGTTAGCTAAGAAAACTGGTCAAATGACTAAGTTAATTGTAGCGCAGAGAATCTCGACTATTATGGACGCTGATCAAATC
ATTGTTTTGGACAAAGGGAAAGTTGTTGGCCAAGGAACTCATGAAGAGCTGCTGGCTGATAATAATATCTATCAAGAAAT
TGCCTACTCACAATTATCAAAGGAGGAGTTAGAAAATGAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB G5JU25

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

85.191

100

0.852


Multiple sequence alignment