Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DYB47_RS04600 Genome accession   NZ_UHFV01000002
Coordinates   873880..875637 (+) Length   585 a.a.
NCBI ID   WP_003081868.1    Uniprot ID   G5JU26
Organism   Streptococcus macacae NCTC 11558     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 868880..880637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS04580 (NCTC11558_00925) - 869173..869679 (-) 507 WP_003079140.1 DUF308 domain-containing protein -
  DYB47_RS09880 - 869725..869859 (-) 135 WP_268741100.1 hypothetical protein -
  DYB47_RS04585 (NCTC11558_00926) gdhA 869989..871338 (+) 1350 WP_003082376.1 NADP-specific glutamate dehydrogenase -
  DYB47_RS04590 (NCTC11558_00927) rcrR 871647..872081 (+) 435 WP_003078644.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DYB47_RS04595 (NCTC11558_00928) rcrP 872085..873890 (+) 1806 WP_003080340.1 ABC transporter ATP-binding protein Regulator
  DYB47_RS04600 (NCTC11558_00929) rcrQ 873880..875637 (+) 1758 WP_003081868.1 ABC transporter ATP-binding protein Regulator
  DYB47_RS09680 - 875911..876059 (+) 149 Protein_851 ComC/BlpC family peptide pheromone/bacteriocin -
  DYB47_RS04605 (NCTC11558_00930) - 876131..876556 (+) 426 WP_003081483.1 hypothetical protein -
  DYB47_RS04610 (NCTC11558_00931) - 876756..877379 (+) 624 WP_003079117.1 GTP pyrophosphokinase -
  DYB47_RS04615 (NCTC11558_00932) - 877381..878082 (+) 702 WP_003080903.1 response regulator transcription factor -
  DYB47_RS04620 (NCTC11558_00933) - 878072..879307 (+) 1236 WP_003078690.1 sensor histidine kinase -
  DYB47_RS04625 (NCTC11558_00934) - 879375..879728 (-) 354 WP_003080138.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 65015.35 Da        Isoelectric Point: 8.5238

>NTDB_id=1171314 DYB47_RS04600 WP_003081868.1 873880..875637(+) (rcrQ) [Streptococcus macacae NCTC 11558]
MKNKQNNSLLRQMAPYLKGYKLLFGLAIIFTIISSIVTVIGPDRLKEITDIMTKGLTGKIDLDKIAGISFFYAFLYIAGG
LVSYAASFIVSTLIQKVSQRLRNAIADKINKVPLAYFDSHSQGDTLSRVTNDVDLMTQSFNQSLVSMVSAVVLLIGSIFM
MIKTNGALAATAILSVFAGFSISSIIMVKSQPFFKRQQDNLASVSGYVEEIYSGHNVVSSYNARQQSKQQFEKLNSQLFS
SMWKSQFFSGIMMPMMQFIGNFGYVMVCIVGATMAINGHITIGTIVAFMTYVRIFTQPISQIAQGITQLQSANAAIGRVF
EFLDEKEMETEDYKKKQLDKVEGNIIFENVFFGYDTDKTIIHDFSAQAKAGQKIAIVGPTGAGKTTIVNLLMRFYEVNKG
RISIDGVNIHDMKREEVHDAFAMVLQDTWLFKGTVKENLIYNQKHITDEQVIAAAKAIGVHHFIKTLPKGYDTVLDDSVT
LSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGKTSFVIAHRLSTIRNADLILVMKDGNIIEQG
NHNQLMAQNGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=1171314 DYB47_RS04600 WP_003081868.1 873880..875637(+) (rcrQ) [Streptococcus macacae NCTC 11558]
ATGAAAAATAAACAGAATAATTCATTATTAAGACAAATGGCTCCTTACCTTAAAGGATACAAACTGCTGTTTGGCCTTGC
TATTATTTTTACAATTATTTCAAGTATCGTTACGGTAATTGGGCCTGATCGGCTCAAAGAGATAACAGATATAATGACAA
AAGGCTTAACTGGCAAGATTGATCTTGATAAAATTGCTGGCATTAGCTTCTTCTATGCTTTCTTGTATATTGCCGGGGGA
TTGGTTTCTTATGCTGCTAGCTTTATTGTATCTACTTTGATTCAAAAAGTTTCACAGCGGCTGCGCAATGCTATCGCAGA
TAAAATCAATAAAGTGCCTTTGGCTTATTTTGACAGTCATTCACAAGGTGATACTTTATCTCGTGTCACCAATGATGTCG
ATCTAATGACCCAATCTTTTAACCAAAGTTTGGTTTCAATGGTGTCAGCAGTCGTCCTGCTCATTGGTTCTATTTTTATG
ATGATCAAGACAAACGGTGCTTTAGCAGCGACAGCTATTTTATCTGTTTTTGCTGGTTTTTCCATTTCTTCTATTATCAT
GGTAAAAAGCCAACCCTTCTTTAAACGGCAGCAGGACAACTTAGCTAGTGTTAGTGGTTATGTTGAAGAAATCTATTCGG
GCCACAATGTTGTTTCCAGCTATAATGCACGCCAGCAAAGCAAACAGCAATTTGAGAAATTAAACAGTCAATTATTCTCC
AGCATGTGGAAATCACAGTTCTTTTCAGGAATTATGATGCCAATGATGCAGTTTATAGGTAATTTTGGCTATGTTATGGT
TTGTATTGTTGGTGCTACGATGGCTATCAATGGTCATATTACGATAGGAACGATTGTTGCCTTTATGACTTATGTCCGTA
TTTTTACACAGCCTATTTCGCAAATTGCTCAAGGCATTACCCAGTTGCAGTCAGCCAATGCTGCAATTGGCCGTGTTTTT
GAATTTCTGGATGAAAAAGAAATGGAAACTGAGGATTATAAAAAGAAACAGCTTGATAAAGTTGAGGGTAATATTATTTT
TGAAAATGTCTTTTTCGGTTATGATACAGACAAGACTATTATCCATGATTTTTCAGCTCAGGCTAAGGCTGGTCAAAAAA
TTGCTATTGTTGGTCCCACTGGTGCTGGTAAGACGACGATTGTTAATTTGCTGATGCGTTTCTATGAGGTCAATAAAGGA
AGAATTTCTATTGATGGTGTTAATATCCATGATATGAAACGAGAAGAAGTGCATGATGCTTTTGCTATGGTGCTTCAAGA
TACTTGGCTCTTTAAAGGTACTGTTAAAGAAAATCTGATTTATAATCAGAAACATATTACAGATGAACAAGTGATTGCAG
CAGCTAAGGCAATTGGTGTCCATCATTTCATTAAGACTTTACCTAAAGGTTATGACACTGTTTTAGATGATTCGGTTACC
TTATCAGTTGGTCAGAAACAACTCTTGACCATTGCTAGGGCTCTTCTTAAGGATGCACCGCTTCTGATTTTAGATGAAGC
AACGTCATCGGTTGATACACGGACAGAAGAGCTTATTCAAAAGGCTATGGATAAACTGATGGAAGGTAAAACTTCATTTG
TCATTGCCCATCGTTTGTCTACTATCCGCAACGCTGATCTAATTCTTGTCATGAAAGATGGTAACATCATTGAACAGGGA
AATCACAATCAGCTGATGGCGCAAAATGGCTTTTATGCTGATCTTTATAATAGTCAGTTTACAGAAGAAGTGGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(362-509)

ABC transporter transmembrane region (ABC_membrane)

(25-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JU26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

87.179

100

0.872

Multiple sequence alignment