Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOQOP_RS06000 Genome accession   NZ_OZ245012
Coordinates   1300363..1300896 (+) Length   177 a.a.
NCBI ID   WP_420565416.1    Uniprot ID   -
Organism   MAG: Thalassobaculum sp. isolate faa8e8ba-76a1-413a-bf4c-fe0cfe5a1ac7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1295363..1305896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOQOP_RS05990 - 1295751..1296938 (-) 1188 WP_420565414.1 IS481 family transposase -
  ACOQOP_RS05995 uvrA 1297114..1300002 (-) 2889 WP_420565415.1 excinuclease ABC subunit UvrA -
  ACOQOP_RS06000 ssb 1300363..1300896 (+) 534 WP_420565416.1 single-stranded DNA-binding protein Machinery gene
  ACOQOP_RS06005 - 1300923..1301750 (+) 828 WP_420565417.1 class I SAM-dependent methyltransferase -
  ACOQOP_RS06010 - 1301913..1303577 (+) 1665 WP_420565418.1 ATP-binding protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18695.31 Da        Isoelectric Point: 5.0428

>NTDB_id=1171229 ACOQOP_RS06000 WP_420565416.1 1300363..1300896(+) (ssb) [MAG: Thalassobaculum sp. isolate faa8e8ba-76a1-413a-bf4c-fe0cfe5a1ac7]
MAGSVNKVILVGNLGRDPEVRSTQDGMKIVNLAIATSERWRDRNSGEQRERTEWHRVVIFNENLARIAEQYLRKGSSVYI
EGQLQTRKWTDQSGQERYSTEVVLQRYRGELTLLGGRGEGGGGGDYSRGDDYGGGSSGGGYGGGSSGGGGYGGGSSGGGG
GQPPMGGPSDLDDEIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1171229 ACOQOP_RS06000 WP_420565416.1 1300363..1300896(+) (ssb) [MAG: Thalassobaculum sp. isolate faa8e8ba-76a1-413a-bf4c-fe0cfe5a1ac7]
ATGGCGGGCAGCGTCAACAAGGTGATCCTGGTCGGCAATCTGGGCCGCGACCCGGAAGTGCGATCGACCCAGGACGGCAT
GAAAATCGTGAACCTTGCGATCGCCACCTCGGAGCGCTGGCGCGACCGGAATTCCGGTGAGCAGCGGGAGCGCACCGAGT
GGCATCGCGTGGTGATCTTCAACGAGAACCTGGCCCGCATCGCCGAGCAGTATCTGCGCAAGGGCAGTTCGGTCTATATC
GAGGGCCAGCTCCAGACCCGGAAATGGACCGATCAGAGCGGCCAGGAGCGCTATTCCACCGAGGTCGTGCTGCAGCGCTA
TCGCGGCGAGTTGACCCTGCTGGGCGGCCGCGGTGAGGGTGGCGGCGGCGGCGACTACAGCCGCGGCGACGATTACGGCG
GCGGGTCGTCGGGCGGCGGTTATGGCGGCGGCTCCTCCGGCGGAGGTGGCTACGGCGGCGGATCGTCGGGTGGCGGCGGC
GGCCAGCCCCCGATGGGCGGGCCGAGCGACCTGGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.508
  ssb Glaesserella parasuis strain SC1401

43.75

100

0.475
  ssb Neisseria gonorrhoeae MS11

41.53

100

0.429
  ssb Neisseria meningitidis MC58

41.436

100

0.424

Multiple sequence alignment