Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOQOE_RS17755 Genome accession   NZ_OZ245004
Coordinates   3746806..3747357 (-) Length   183 a.a.
NCBI ID   WP_420554608.1    Uniprot ID   -
Organism   MAG: Neptuniibacter marinus isolate 5ffc281b-0633-46d3-a470-07ce90f1f764     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3741806..3752357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOQOE_RS17740 - 3742194..3743438 (-) 1245 WP_231867922.1 ABC transporter substrate-binding protein -
  ACOQOE_RS17745 - 3743435..3744790 (-) 1356 WP_420554606.1 sigma-54-dependent transcriptional regulator -
  ACOQOE_RS17750 - 3744793..3746535 (-) 1743 WP_420554607.1 ATP-binding protein -
  ACOQOE_RS17755 ssb 3746806..3747357 (-) 552 WP_420554608.1 single-stranded DNA-binding protein Machinery gene
  ACOQOE_RS17760 uvrA 3747649..3750471 (+) 2823 WP_420554609.1 excinuclease ABC subunit UvrA -
  ACOQOE_RS17765 rplQ 3750590..3750979 (-) 390 WP_067862829.1 50S ribosomal protein L17 -
  ACOQOE_RS17770 - 3751018..3752022 (-) 1005 WP_067862830.1 DNA-directed RNA polymerase subunit alpha -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19946.99 Da        Isoelectric Point: 5.2615

>NTDB_id=1171227 ACOQOE_RS17755 WP_420554608.1 3746806..3747357(-) (ssb) [MAG: Neptuniibacter marinus isolate 5ffc281b-0633-46d3-a470-07ce90f1f764]
MARGVNKVILVGNLGGDPEVRYMPNGNAVTNVTIATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYMRKGGKVYVE
GALRTRKWQDQSGADRYTTEIVASEMQLLDSRGAGDGGGYQQQPQAGGYAPQQSAPAPQQPASQPQYAPQQSKPAQRPAA
PQQSAPAPQPAPGFDDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1171227 ACOQOE_RS17755 WP_420554608.1 3746806..3747357(-) (ssb) [MAG: Neptuniibacter marinus isolate 5ffc281b-0633-46d3-a470-07ce90f1f764]
ATGGCACGTGGTGTTAACAAAGTAATTTTGGTCGGTAATCTGGGCGGGGATCCAGAAGTACGTTATATGCCTAACGGTAA
TGCTGTAACTAACGTAACAATTGCAACGTCTGAATCATGGAAAGATAAGCAGACAGGTCAGCAGCAAGAGCGTACAGAGT
GGCACCGTGTTGTCTTTTTTAACCGATTAGCTGAAATCGCCGGCGAGTACATGCGCAAAGGCGGTAAAGTTTATGTCGAA
GGTGCTTTGCGAACGCGTAAATGGCAGGACCAAAGTGGTGCTGATCGTTACACGACTGAGATCGTCGCCAGCGAAATGCA
GCTGCTTGATAGTCGTGGTGCAGGGGATGGCGGTGGCTATCAGCAGCAGCCGCAAGCAGGTGGTTATGCGCCCCAGCAGT
CTGCACCAGCACCTCAACAGCCTGCATCTCAGCCTCAGTATGCGCCTCAGCAGTCTAAACCTGCTCAGCGTCCTGCGGCG
CCCCAGCAGTCAGCACCAGCACCTCAACCTGCTCCTGGGTTTGATGACTTTGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.452

100

0.574
  ssb Glaesserella parasuis strain SC1401

53.368

100

0.563
  ssb Neisseria meningitidis MC58

51.087

100

0.514
  ssb Neisseria gonorrhoeae MS11

51.381

98.907

0.508

Multiple sequence alignment