Detailed information NTG1171222

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACOQOE_RS15495
• Genome accession: NZ_OZ245004
• Coordinates: 3282154..3283320 (+)
• Length: 388 a.a.
• NCBI ID: WP_420554410.1
• Uniprot ID: -
• Organism: MAG: Neptuniibacter marinus isolate 5ffc281b-0633-46d3-a470-07ce90f1f764
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3277154..3288320

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACOQOE_RS15475	-	3278805..3279650 (-)	846	WP_067865724.1	crotonase/enoyl-CoA hydratase family protein	-
ACOQOE_RS15480	-	3279788..3280396 (+)	609	WP_420554407.1	TetR/AcrR family transcriptional regulator	-
ACOQOE_RS15485	-	3280422..3281198 (+)	777	WP_420554408.1	alpha/beta fold hydrolase	-
ACOQOE_RS15490	-	3281403..3282056 (+)	654	WP_420554409.1	YkgJ family cysteine cluster protein	-
ACOQOE_RS15495	pilU	3282154..3283320 (+)	1167	WP_420554410.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACOQOE_RS15500	fadA	3283406..3284581 (-)	1176	WP_420554411.1	acetyl-CoA C-acyltransferase FadA	-
ACOQOE_RS15505	fadB	3284593..3286752 (-)	2160	WP_420554412.1	fatty acid oxidation complex subunit alpha FadB	-
ACOQOE_RS15510	-	3286826..3287755 (-)	930	WP_420554413.1	electron transfer flavoprotein subunit alpha/FixB family protein	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 43642.68 Da
• Isoelectric Point: 4.9684

>NTDB_id=1171222 ACOQOE_RS15495 WP_420554410.1 3282154..3283320(+) (pilU) [MAG: Neptuniibacter marinus isolate 5ffc281b-0633-46d3-a470-07ce90f1f764]
MQFQDYLTILSKRDGSDLYLTTGAPPCAKFEGKLTPLSKEAYKPGEVELIARELMDEQQQAVFEDELEMNLAYSIPKVGR
FRINIFRQRNQYSLVARNIKTDIPKMNDLGLPNVLKDIIMEKRGLVLFVGATGSGKSTSLAALIDHRNRNSGGHIITIED
PIEFVHNHKKSLINQREVGVDTRNFHSALKNALRQAPDVILIGEIRDQETMEQCLTYAETGHLAISTLHANNANQAIDRI
INFFPQARHKQIFHDLALNLKAIISQRLIPTKEGKRCAAIEVMLGTSTIQELIMKGDIKEIKEVMSSASEATGMQTFDDS
LYKLYKQGIITEEQALLNSDSANDMRLKMNLAVEEGDDEKKEDTPQDETFDEENPLAGIRLLDEGEEV

Nucleotide

• Length: 1167 bp

>NTDB_id=1171222 ACOQOE_RS15495 WP_420554410.1 3282154..3283320(+) (pilU) [MAG: Neptuniibacter marinus isolate 5ffc281b-0633-46d3-a470-07ce90f1f764]
ATGCAGTTTCAGGACTACCTTACTATTTTGTCCAAACGCGACGGATCAGACCTCTATCTCACCACTGGAGCTCCACCTTG
TGCAAAGTTCGAAGGCAAGCTGACACCGCTAAGTAAAGAAGCTTATAAACCGGGTGAAGTTGAACTGATCGCTCGCGAAC
TAATGGATGAGCAACAACAAGCTGTTTTTGAAGACGAGTTAGAGATGAACTTAGCCTACTCCATTCCTAAAGTGGGCCGT
TTTCGTATCAATATTTTCCGCCAGCGAAACCAATACTCCCTTGTCGCCCGAAATATTAAAACCGACATTCCAAAAATGAA
TGACTTAGGGCTACCTAATGTCCTTAAAGATATCATTATGGAAAAACGCGGTCTCGTGTTATTTGTTGGTGCTACAGGTT
CAGGTAAATCTACATCTTTAGCCGCCTTAATTGACCATCGTAACCGCAACAGTGGCGGTCATATTATTACCATTGAAGAC
CCTATCGAGTTTGTCCATAACCATAAAAAGTCATTGATTAACCAGCGCGAGGTGGGTGTAGATACACGAAACTTCCATAG
CGCCTTAAAAAACGCACTGCGACAAGCCCCCGATGTAATTTTAATCGGTGAAATACGTGACCAAGAAACCATGGAACAGT
GTTTAACTTATGCCGAAACAGGGCATTTAGCTATATCAACACTGCATGCTAATAACGCTAACCAAGCGATAGATCGTATT
ATCAACTTTTTCCCACAAGCGCGTCATAAACAGATATTTCACGACTTAGCGCTTAACCTTAAAGCCATTATTTCCCAGCG
CCTCATCCCCACAAAAGAGGGTAAACGCTGCGCGGCAATTGAAGTGATGTTAGGCACATCAACGATCCAAGAACTGATTA
TGAAGGGTGATATCAAAGAGATTAAAGAAGTGATGTCATCCGCCTCTGAAGCGACAGGGATGCAAACCTTTGATGATTCA
CTTTATAAGCTTTATAAACAAGGGATCATTACAGAGGAGCAGGCCCTGCTCAATTCCGACTCAGCAAACGATATGCGTTT
AAAAATGAACCTTGCTGTTGAGGAAGGTGATGATGAAAAAAAAGAAGACACACCACAAGACGAAACATTTGACGAAGAGA
ATCCTCTCGCAGGAATCAGACTGTTAGATGAGGGCGAAGAGGTCTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	54.085	91.495	0.495
pilU	Acinetobacter baylyi ADP1	48.541	97.165	0.472
pilU	Vibrio cholerae strain A1552	48.189	92.526	0.446
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.643	85.825	0.366