Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOQOU_RS01140 Genome accession   NZ_OZ244994
Coordinates   219152..219667 (-) Length   171 a.a.
NCBI ID   WP_306025622.1    Uniprot ID   -
Organism   MAG: Oceaniradius stylonematis isolate f4749284-7ece-4f1a-bfa4-5d499b9e3234     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 214152..224667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOQOU_RS01120 - 214401..215030 (-) 630 WP_109767091.1 LysE family translocator -
  ACOQOU_RS01125 gyrA 215037..217757 (-) 2721 WP_420578895.1 DNA gyrase subunit A -
  ACOQOU_RS01130 - 218054..218680 (+) 627 WP_306025620.1 MarC family protein -
  ACOQOU_RS01135 - 218704..219138 (-) 435 WP_306025621.1 hypothetical protein -
  ACOQOU_RS01140 ssb 219152..219667 (-) 516 WP_306025622.1 single-stranded DNA-binding protein Machinery gene
  ACOQOU_RS01145 uvrA 219976..222906 (+) 2931 WP_306025623.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18791.65 Da        Isoelectric Point: 5.0866

>NTDB_id=1171201 ACOQOU_RS01140 WP_306025622.1 219152..219667(-) (ssb) [MAG: Oceaniradius stylonematis isolate f4749284-7ece-4f1a-bfa4-5d499b9e3234]
MAGSVNKVILVGNLGADPEIRRLNSGDPVVNLSVATSETWRDKQSGERRERTEWHRVVIFNENLAKVAENYLKKGAKVYI
EGQLQTRKWTDQNGQDKYTTEIVLQRFRGELQMLDSRADAEGGYGGRGQGGGYGNDRVGQGAGGMDRGGGQQSGEQGGND
FVRDLDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1171201 ACOQOU_RS01140 WP_306025622.1 219152..219667(-) (ssb) [MAG: Oceaniradius stylonematis isolate f4749284-7ece-4f1a-bfa4-5d499b9e3234]
ATGGCAGGCAGCGTCAACAAGGTTATTCTCGTCGGCAATCTGGGGGCGGACCCGGAGATTCGGCGGCTGAATTCGGGCGA
TCCGGTGGTCAATCTGTCGGTGGCAACGTCCGAGACATGGCGCGACAAACAGTCGGGCGAACGCCGCGAGCGCACCGAAT
GGCATCGTGTGGTGATCTTCAACGAGAATCTCGCCAAGGTGGCCGAGAACTATCTGAAGAAGGGCGCCAAGGTCTATATC
GAGGGCCAACTGCAGACGCGCAAATGGACCGACCAGAACGGCCAGGACAAATACACGACCGAGATCGTGCTGCAGCGCTT
CCGCGGCGAATTGCAGATGCTCGACAGCCGCGCCGACGCCGAAGGCGGCTATGGCGGCCGCGGGCAGGGCGGCGGCTATG
GCAATGACCGCGTCGGGCAGGGCGCCGGCGGCATGGATCGCGGCGGCGGTCAGCAGAGTGGCGAGCAGGGCGGCAACGAC
TTTGTCCGCGATCTCGATGACGAGATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.468

100

0.544
  ssb Vibrio cholerae strain A1552

50.867

100

0.515
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.409
  ssb Neisseria meningitidis MC58

38.547

100

0.404

Multiple sequence alignment