Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOQPC_RS15470 Genome accession   NZ_OZ244708
Coordinates   3270194..3270712 (+) Length   172 a.a.
NCBI ID   WP_420606595.1    Uniprot ID   -
Organism   MAG: Novosphingopyxis sp. isolate 44716d93-2153-4b12-b6a4-e6b102f8d48c     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3265194..3275712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOQPC_RS15450 - 3265757..3266449 (-) 693 WP_420608166.1 COQ9 family protein -
  ACOQPC_RS15455 - 3266557..3267654 (+) 1098 WP_420606592.1 alkene reductase -
  ACOQPC_RS15460 - 3267937..3268179 (+) 243 WP_420606593.1 FeoA family protein -
  ACOQPC_RS15465 feoB 3268176..3270041 (+) 1866 WP_420606594.1 ferrous iron transporter B -
  ACOQPC_RS15470 ssb 3270194..3270712 (+) 519 WP_420606595.1 single-stranded DNA-binding protein Machinery gene
  ACOQPC_RS15475 - 3270775..3272274 (+) 1500 WP_420608167.1 dihydrolipoyl dehydrogenase family protein -
  ACOQPC_RS15480 - 3272479..3272676 (+) 198 WP_420606596.1 hypothetical protein -
  ACOQPC_RS15485 - 3272754..3273308 (-) 555 WP_420606597.1 YceD family protein -
  ACOQPC_RS15490 - 3273305..3273826 (-) 522 WP_420606598.1 ubiquinol-cytochrome C chaperone family protein -
  ACOQPC_RS15495 - 3273990..3274490 (+) 501 WP_420606599.1 outer membrane protein assembly factor BamE -
  ACOQPC_RS15500 - 3274707..3275174 (+) 468 WP_420606600.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 17615.16 Da        Isoelectric Point: 4.7789

>NTDB_id=1171100 ACOQPC_RS15470 WP_420606595.1 3270194..3270712(+) (ssb) [MAG: Novosphingopyxis sp. isolate 44716d93-2153-4b12-b6a4-e6b102f8d48c]
MAGSVNKVILIGNLGADPEVKTFQNGGRLCNLRMATSENWKDRQTGERKERTEWHTVTIKSDGLVGVAEKYLRKGSKIYV
EGQLQTRKWQDQSGNDRYSTEVVLSGPGAVMTMLDGAPGSGGGSGGGGGGWNQGGSGGGGGGSSSGGGGGSGGGWNQDGG
DFADDLDDEVPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1171100 ACOQPC_RS15470 WP_420606595.1 3270194..3270712(+) (ssb) [MAG: Novosphingopyxis sp. isolate 44716d93-2153-4b12-b6a4-e6b102f8d48c]
ATGGCAGGCAGCGTAAACAAGGTTATTCTGATCGGCAATCTGGGCGCGGACCCCGAAGTGAAGACGTTCCAGAACGGCGG
GCGCCTGTGCAATCTGCGCATGGCCACGTCGGAGAACTGGAAGGACCGGCAGACGGGGGAGCGCAAGGAGCGTACCGAGT
GGCACACGGTGACGATCAAGTCCGACGGGCTGGTCGGCGTGGCCGAGAAATATCTGCGCAAGGGATCGAAAATCTACGTC
GAGGGCCAGTTGCAGACCCGCAAATGGCAGGACCAGTCGGGCAATGACCGCTATTCGACCGAAGTCGTGCTGAGCGGCCC
CGGCGCGGTGATGACCATGCTCGACGGCGCCCCCGGCAGCGGCGGCGGATCGGGCGGCGGAGGCGGCGGCTGGAACCAGG
GCGGCAGCGGCGGCGGGGGCGGCGGTTCGTCCTCCGGCGGCGGCGGCGGATCGGGTGGCGGCTGGAACCAGGACGGCGGC
GATTTCGCCGACGATCTTGACGACGAAGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.718

100

0.512
  ssb Glaesserella parasuis strain SC1401

44.624

100

0.483
  ssb Neisseria meningitidis MC58

37.989

100

0.395
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.395

Multiple sequence alignment