Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOOFH_RS20065 Genome accession   NZ_OZ244164
Coordinates   4182465..4182959 (-) Length   164 a.a.
NCBI ID   WP_057815535.1    Uniprot ID   A0A0T5PB88
Organism   MAG: Roseovarius indicus isolate 21403496-fbac-4b00-ad5a-9519440e3d69     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4177465..4187959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOOFH_RS20035 - 4178094..4178378 (+) 285 WP_064259604.1 DUF1330 domain-containing protein -
  ACOOFH_RS20040 - 4178401..4178688 (+) 288 WP_057815539.1 DUF1330 domain-containing protein -
  ACOOFH_RS20045 - 4179035..4179301 (+) 267 WP_057815538.1 hypothetical protein -
  ACOOFH_RS20050 typA 4179426..4181246 (-) 1821 WP_420423725.1 translational GTPase TypA -
  ACOOFH_RS20055 - 4181277..4182224 (-) 948 WP_420423726.1 GNAT family N-acetyltransferase -
  ACOOFH_RS20060 - 4182273..4182413 (+) 141 WP_420423727.1 hypothetical protein -
  ACOOFH_RS20065 ssb 4182465..4182959 (-) 495 WP_057815535.1 single-stranded DNA-binding protein Machinery gene
  ACOOFH_RS20070 - 4183179..4183742 (+) 564 WP_138179253.1 lytic transglycosylase domain-containing protein -
  ACOOFH_RS20075 - 4183798..4185465 (-) 1668 WP_420423728.1 ABC transporter substrate-binding protein -
  ACOOFH_RS20080 - 4185554..4186546 (-) 993 WP_420423729.1 helix-turn-helix domain-containing protein -
  ACOOFH_RS20085 miaA 4186654..4187535 (-) 882 WP_420423730.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17886.56 Da        Isoelectric Point: 5.3021

>NTDB_id=1171051 ACOOFH_RS20065 WP_057815535.1 4182465..4182959(-) (ssb) [MAG: Roseovarius indicus isolate 21403496-fbac-4b00-ad5a-9519440e3d69]
MAGSVNKVIIIGNLGRDPEVRTFQNGGKVCNLRVATSEQWKDRNTGERRERTEWHSVAIFQEGLVRVCEQYLRKGSKVYL
EGKLQTRKWQDQSGQDRYSTEVVLQGFDGTLVMLDGRDGGGGSQGGNYGGGGSDYGSGYDSGPSQGGQPSSPGPSRDYDD
EIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1171051 ACOOFH_RS20065 WP_057815535.1 4182465..4182959(-) (ssb) [MAG: Roseovarius indicus isolate 21403496-fbac-4b00-ad5a-9519440e3d69]
ATGGCCGGATCGGTCAACAAGGTAATCATTATCGGCAACCTGGGCCGCGACCCCGAGGTGCGCACGTTCCAGAACGGCGG
CAAGGTGTGCAACCTGCGCGTGGCGACTTCGGAGCAGTGGAAAGATCGCAACACCGGCGAGCGCCGCGAGCGGACGGAAT
GGCACAGCGTGGCGATCTTCCAGGAAGGTCTTGTGCGGGTGTGCGAGCAATATCTGCGCAAGGGCTCGAAGGTCTACCTG
GAAGGCAAGCTGCAGACACGCAAGTGGCAGGACCAGTCCGGCCAGGACCGGTATTCGACCGAGGTTGTCCTGCAAGGGTT
CGACGGCACGCTTGTGATGCTTGACGGGCGCGATGGCGGCGGTGGCAGCCAGGGCGGCAATTACGGTGGCGGCGGCAGCG
ATTACGGTAGCGGCTATGACAGCGGCCCGTCGCAAGGGGGGCAGCCTTCGTCGCCCGGACCGTCGCGTGACTACGACGAC
GAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T5PB88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.454

100

0.573
  ssb Vibrio cholerae strain A1552

52.023

100

0.549
  ssb Neisseria meningitidis MC58

41.989

100

0.463
  ssb Neisseria gonorrhoeae MS11

41.436

100

0.457

Multiple sequence alignment