Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOOFO_RS14990 Genome accession   NZ_OZ244162
Coordinates   3249798..3250271 (-) Length   157 a.a.
NCBI ID   WP_420427555.1    Uniprot ID   -
Organism   MAG: Algiphilus sp. isolate dd919ab0-ff71-4ff6-8152-ac5c3678e526     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3244798..3255271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOOFO_RS14980 - 3246423..3247358 (+) 936 WP_420427553.1 LysR family transcriptional regulator -
  ACOOFO_RS14985 - 3247501..3249789 (+) 2289 WP_420427554.1 NADP-dependent malic enzyme -
  ACOOFO_RS14990 ssb 3249798..3250271 (-) 474 WP_420427555.1 single-stranded DNA-binding protein Machinery gene
  ACOOFO_RS14995 - 3250282..3251448 (-) 1167 WP_420427556.1 MFS transporter -
  ACOOFO_RS15000 uvrA 3251552..3254386 (+) 2835 WP_420427557.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16831.53 Da        Isoelectric Point: 5.2707

>NTDB_id=1171046 ACOOFO_RS14990 WP_420427555.1 3249798..3250271(-) (ssb) [MAG: Algiphilus sp. isolate dd919ab0-ff71-4ff6-8152-ac5c3678e526]
MARGINKVILVGNLGQDPEVRYTANGTAVANLRIATTESWRDKQSGEQRENTEWHTVVLFGKTAEIASQYLKKGRQVFIE
GKLQTRKWQDKSGNDRYSTEVVANDMQMLGGGGPGGGSADFDGGGGGGGMSRGGGQSQPAPQREPAPQSFEDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1171046 ACOOFO_RS14990 WP_420427555.1 3249798..3250271(-) (ssb) [MAG: Algiphilus sp. isolate dd919ab0-ff71-4ff6-8152-ac5c3678e526]
ATGGCACGCGGCATCAATAAAGTGATTCTGGTCGGCAATCTGGGACAGGATCCCGAGGTGCGCTACACCGCCAACGGCAC
GGCGGTGGCCAACCTTCGCATTGCCACCACCGAGAGCTGGCGCGACAAGCAAAGCGGCGAGCAGCGCGAGAACACCGAAT
GGCACACCGTCGTGCTGTTCGGCAAGACCGCGGAGATTGCCAGCCAGTATCTCAAGAAGGGGCGGCAGGTCTTCATCGAA
GGCAAGCTCCAGACCCGCAAGTGGCAGGACAAGTCGGGCAACGACCGCTACAGCACCGAGGTCGTTGCCAACGACATGCA
GATGCTCGGCGGTGGCGGCCCCGGCGGCGGTAGCGCGGACTTCGACGGTGGCGGTGGGGGTGGCGGCATGAGCCGCGGCG
GCGGCCAGTCCCAGCCAGCGCCGCAGCGCGAACCCGCGCCGCAGAGCTTCGAGGACGACGATATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.429

100

0.618
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.548
  ssb Neisseria gonorrhoeae MS11

46.243

100

0.51
  ssb Neisseria meningitidis MC58

45.665

100

0.503

Multiple sequence alignment