Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOOGA_RS00605 Genome accession   NZ_OZ244153
Coordinates   124715..125239 (-) Length   174 a.a.
NCBI ID   WP_417460853.1    Uniprot ID   -
Organism   MAG: Kordiimonas sp. isolate def65876-ef31-448d-83e5-856ba072f58d     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 119715..130239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOOGA_RS00575 - 119768..119938 (-) 171 WP_420429291.1 hypothetical protein -
  ACOOGA_RS00580 - 120134..121315 (+) 1182 WP_417460848.1 acetyl-CoA C-acyltransferase -
  ACOOGA_RS00585 - 121330..122463 (+) 1134 WP_417460849.1 acyl-CoA dehydrogenase family protein -
  ACOOGA_RS00590 - 122499..123332 (-) 834 WP_417460850.1 patatin-like phospholipase family protein -
  ACOOGA_RS00595 - 123401..123892 (-) 492 WP_417460851.1 YybH family protein -
  ACOOGA_RS00600 - 124092..124646 (+) 555 WP_417460852.1 DUF1579 family protein -
  ACOOGA_RS00605 ssb 124715..125239 (-) 525 WP_417460853.1 single-stranded DNA-binding protein Machinery gene
  ACOOGA_RS00610 - 125543..126073 (+) 531 WP_417460854.1 hypothetical protein -
  ACOOGA_RS00615 - 126263..127324 (+) 1062 WP_417460855.1 CNNM domain-containing protein -
  ACOOGA_RS00620 - 127338..127757 (-) 420 WP_417460856.1 GFA family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18495.15 Da        Isoelectric Point: 5.0019

>NTDB_id=1171012 ACOOGA_RS00605 WP_417460853.1 124715..125239(-) (ssb) [MAG: Kordiimonas sp. isolate def65876-ef31-448d-83e5-856ba072f58d]
MAGSVNKVILVGNLGRDPEVRTMNDGSPVVNLSLATSETWRDRASGERRERTEWHRVVIFNENLAKVAQQYLKKGSTIYI
EGQLQTRKWTDQQGVEKYSTEVVLQRFRGELTMLGGRGDSQGGGFGESSQSSYGGDFGGSSQGGSQGGNQGGGQGGNQGG
GFGGGGDLDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1171012 ACOOGA_RS00605 WP_417460853.1 124715..125239(-) (ssb) [MAG: Kordiimonas sp. isolate def65876-ef31-448d-83e5-856ba072f58d]
ATGGCCGGTAGTGTGAATAAGGTAATTTTGGTGGGCAACCTTGGGCGTGACCCTGAGGTACGGACGATGAACGATGGCTC
ACCCGTGGTGAATTTATCGCTTGCGACGTCTGAGACATGGCGGGACCGCGCATCAGGCGAACGCCGCGAGCGGACCGAAT
GGCACCGCGTGGTTATCTTCAACGAAAACCTGGCGAAAGTTGCACAGCAGTACCTGAAAAAAGGTTCGACCATTTACATT
GAAGGCCAGCTTCAAACTCGTAAGTGGACAGACCAACAAGGTGTTGAGAAATACTCCACCGAAGTTGTTCTGCAGCGGTT
CCGTGGTGAGCTGACGATGCTTGGTGGTCGCGGCGATAGCCAGGGCGGCGGTTTTGGTGAAAGCAGCCAGTCCAGCTATG
GCGGTGATTTTGGCGGCAGCTCGCAAGGTGGTAGCCAGGGCGGCAATCAAGGTGGCGGCCAAGGCGGAAATCAGGGCGGC
GGCTTTGGTGGCGGCGGTGATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.429

100

0.517
  ssb Glaesserella parasuis strain SC1401

45.55

100

0.5
  ssb Neisseria meningitidis MC58

42.222

100

0.437
  ssb Neisseria gonorrhoeae MS11

41.667

100

0.431

Multiple sequence alignment