Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOOEX_RS07410 Genome accession   NZ_OZ244111
Coordinates   1438244..1438759 (-) Length   171 a.a.
NCBI ID   WP_306047049.1    Uniprot ID   -
Organism   MAG: Nioella sp. isolate 28273829-15dd-4ca7-8948-c04e0f47a426     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1433244..1443759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOOEX_RS07395 trpE 1433583..1435094 (-) 1512 WP_420397815.1 anthranilate synthase component I -
  ACOOEX_RS07400 - 1435101..1436960 (-) 1860 WP_420397816.1 peptidylprolyl isomerase -
  ACOOEX_RS07405 - 1437030..1438217 (-) 1188 WP_420397817.1 aminotransferase -
  ACOOEX_RS07410 ssb 1438244..1438759 (-) 516 WP_306047049.1 single-stranded DNA-binding protein Machinery gene
  ACOOEX_RS07415 - 1438927..1439505 (+) 579 WP_371931257.1 lytic transglycosylase domain-containing protein -
  ACOOEX_RS07420 - 1439532..1440221 (-) 690 WP_420397818.1 hypothetical protein -
  ACOOEX_RS07425 - 1440378..1441082 (+) 705 WP_420397819.1 hypothetical protein -
  ACOOEX_RS07430 - 1441083..1441751 (-) 669 WP_420397820.1 hypothetical protein -
  ACOOEX_RS07435 mnmA 1441819..1442961 (-) 1143 WP_420397821.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACOOEX_RS07440 - 1443143..1443361 (+) 219 WP_420398344.1 DUF1153 domain-containing protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18299.89 Da        Isoelectric Point: 5.3474

>NTDB_id=1170981 ACOOEX_RS07410 WP_306047049.1 1438244..1438759(-) (ssb) [MAG: Nioella sp. isolate 28273829-15dd-4ca7-8948-c04e0f47a426]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERRERTEWHSVAIFSEPLARIAEQYLRKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYRGELTLLDSRSDSGGGGGYGGGGQGGGYGGGGGYPDDRDGGYGGGGGSQGGGG
RSNDMDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1170981 ACOOEX_RS07410 WP_306047049.1 1438244..1438759(-) (ssb) [MAG: Nioella sp. isolate 28273829-15dd-4ca7-8948-c04e0f47a426]
ATGGCTGGGTCCGTCAACAAGGTCATTCTGATAGGCAATCTGGGACGCGATCCCGAGGTTCGGTCGTTCCAGAATGGCGG
CAAGGTCTGCAACCTGCGCATCGCCACCAGCGAAACCTGGAAGGACCGAAACACCGGCGAACGGCGCGAGCGGACCGAAT
GGCACTCCGTCGCCATCTTTTCCGAGCCCCTCGCGCGGATTGCCGAGCAATATCTGCGCAAGGGCTCCAAGGTCTATATC
GAGGGGCAGCTTGAAACCCGCAAATGGCAGGATCAGTCCGGCCAGGACCGCTATTCGACCGAGGTCGTGCTGCGCCCCTA
TCGCGGGGAACTGACCCTGCTGGACAGCCGCAGCGACAGCGGCGGTGGCGGCGGCTACGGCGGCGGCGGACAGGGTGGCG
GCTATGGCGGGGGCGGCGGCTATCCCGATGACCGTGACGGTGGCTATGGCGGCGGTGGCGGCAGCCAGGGCGGCGGTGGC
CGGTCCAACGACATGGATGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.299

100

0.532
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.526
  ssb Neisseria gonorrhoeae MS11

40.782

100

0.427
  ssb Neisseria meningitidis MC58

39.665

100

0.415

Multiple sequence alignment