Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOOHE_RS12915 Genome accession   NZ_OZ243912
Coordinates   2901356..2901850 (+) Length   164 a.a.
NCBI ID   WP_420454495.1    Uniprot ID   -
Organism   MAG: Rubrivirga sp. isolate ea9bf608-3c81-4348-88b3-bda7443e7dba     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2896356..2906850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOOHE_RS12895 - 2898387..2898860 (-) 474 WP_420454491.1 hypothetical protein -
  ACOOHE_RS12900 - 2898961..2899527 (-) 567 WP_420454492.1 hypothetical protein -
  ACOOHE_RS12905 hisB 2899708..2900310 (+) 603 WP_420454493.1 imidazoleglycerol-phosphate dehydratase HisB -
  ACOOHE_RS12910 mazG 2900349..2901191 (-) 843 WP_420454494.1 nucleoside triphosphate pyrophosphohydrolase -
  ACOOHE_RS12915 ssb 2901356..2901850 (+) 495 WP_420454495.1 single-stranded DNA-binding protein Machinery gene
  ACOOHE_RS12920 - 2902463..2903818 (+) 1356 WP_420454496.1 hemolysin family protein -
  ACOOHE_RS12925 - 2903815..2904666 (+) 852 WP_420454497.1 penicillin-binding transpeptidase domain-containing protein -
  ACOOHE_RS12930 - 2904696..2906270 (+) 1575 WP_420454498.1 hypothetical protein -
  ACOOHE_RS12935 - 2906273..2906707 (+) 435 WP_420454499.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18005.51 Da        Isoelectric Point: 4.5226

>NTDB_id=1170970 ACOOHE_RS12915 WP_420454495.1 2901356..2901850(+) (ssb) [MAG: Rubrivirga sp. isolate ea9bf608-3c81-4348-88b3-bda7443e7dba]
MARGINKVILVGNLGADPELRYTGSGTAVCNFSVATTESYKDRDGNQVENTEWHRVVAWARLAEICGEYLSKGRQVYIEG
QLQTRQWEDKDGNTKYTTEIKAREMQMLGSRDGGGGSSDDGDSYDQSPRPQRQASSNGGGNRPQKAASGPSDDYSFEPDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1170970 ACOOHE_RS12915 WP_420454495.1 2901356..2901850(+) (ssb) [MAG: Rubrivirga sp. isolate ea9bf608-3c81-4348-88b3-bda7443e7dba]
ATGGCACGCGGAATCAACAAAGTCATCCTGGTCGGCAACCTCGGCGCCGACCCCGAGCTCCGGTACACCGGCAGCGGCAC
GGCCGTCTGCAACTTCTCGGTCGCCACGACCGAGTCCTACAAGGACCGCGACGGCAACCAGGTCGAGAACACCGAGTGGC
ACCGGGTCGTGGCCTGGGCCCGGCTCGCGGAGATCTGCGGCGAGTACCTCTCGAAGGGCCGCCAGGTCTACATCGAGGGC
CAGCTCCAGACGCGGCAGTGGGAGGACAAGGACGGCAACACGAAGTACACGACCGAGATCAAGGCCCGCGAGATGCAGAT
GCTCGGGAGCCGCGACGGCGGCGGCGGGTCGAGCGACGACGGCGACAGCTACGACCAGTCGCCGCGCCCGCAGCGCCAGG
CGTCGAGCAACGGCGGCGGCAACCGGCCTCAGAAGGCCGCCTCCGGCCCCTCCGACGACTACTCGTTCGAGCCCGACGAC
GATCTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.455

100

0.488
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.476
  ssb Glaesserella parasuis strain SC1401

42.857

100

0.476
  ssb Neisseria meningitidis MC58

43.182

100

0.463

Multiple sequence alignment