Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AW03_RS20485 Genome accession   NZ_CP007173
Coordinates   3996210..3996728 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis HJ5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3991210..4001728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS20455 (AW03_039410) yyaJ 3991718..3993073 (+) 1356 WP_015483979.1 MFS transporter -
  AW03_RS20460 (AW03_039420) maa 3993107..3993661 (-) 555 WP_015385213.1 maltose acetyltransferase domain-containing protein -
  AW03_RS20465 (AW03_039430) yyaH 3993677..3994057 (-) 381 WP_015483980.1 VOC family protein -
  AW03_RS20470 (AW03_039440) ccpB 3994113..3995045 (-) 933 WP_015385215.1 transcriptional regulator CcpB -
  AW03_RS20475 (AW03_039450) xth 3995104..3995862 (-) 759 WP_015385216.1 exodeoxyribonuclease III -
  AW03_RS20480 (AW03_039460) rpsR 3995927..3996166 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  AW03_RS20485 (AW03_039470) ssbA 3996210..3996728 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  AW03_RS20490 (AW03_039480) rpsF 3996769..3997056 (-) 288 WP_003236622.1 30S ribosomal protein S6 -
  AW03_RS20495 (AW03_039490) ychF 3997167..3998267 (-) 1101 WP_015483981.1 redox-regulated ATPase YchF -
  AW03_RS20500 (AW03_039500) yyaE 3998394..4000397 (-) 2004 WP_015385219.1 molybdopterin-dependent oxidoreductase -
  AW03_RS20505 (AW03_039510) yyzM 4000448..4000654 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=117084 AW03_RS20485 WP_003219228.1 3996210..3996728(-) (ssbA) [Bacillus subtilis HJ5]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=117084 AW03_RS20485 WP_003219228.1 3996210..3996728(-) (ssbA) [Bacillus subtilis HJ5]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAACGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment