Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOFKY_RS15490 Genome accession   NZ_OZ241355
Coordinates   3349743..3350351 (-) Length   202 a.a.
NCBI ID   WP_105713882.1    Uniprot ID   -
Organism   MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3344743..3355351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKY_RS15460 ycaC 3345514..3346140 (+) 627 WP_004818434.1 isochorismate family cysteine hydrolase YcaC -
  ACOFKY_RS15465 - 3346259..3347182 (+) 924 WP_004718559.1 LysR substrate-binding domain-containing protein -
  ACOFKY_RS15470 ahpC 3347254..3347817 (-) 564 WP_004718560.1 alkyl hydroperoxide reductase subunit C -
  ACOFKY_RS15475 - 3348038..3348373 (+) 336 WP_336952409.1 hypothetical protein -
  ACOFKY_RS15480 - 3348407..3349042 (-) 636 WP_419819746.1 TetR/AcrR family transcriptional regulator -
  ACOFKY_RS15485 - 3349193..3349657 (+) 465 WP_419326958.1 hotdog fold domain-containing protein -
  ACOFKY_RS15490 ssb 3349743..3350351 (-) 609 WP_105713882.1 single-stranded DNA-binding protein Machinery gene
  ACOFKY_RS15495 - 3350403..3351767 (-) 1365 WP_419819747.1 MFS transporter -
  ACOFKY_RS15500 - 3351907..3352989 (-) 1083 WP_171066888.1 DUF475 domain-containing protein -
  ACOFKY_RS15505 tenA 3353224..3353892 (+) 669 WP_419819748.1 thiaminase II -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21908.61 Da        Isoelectric Point: 6.4829

>NTDB_id=1170788 ACOFKY_RS15490 WP_105713882.1 3349743..3350351(-) (ssb) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEGAAADNGGYNQPRFNNNQQGGFNNNQGGGGYANQGNQGGGYGNA
NPQGGYGNGGNNVNQGFQSPKPAATPSAPTAAPADLDDDLPF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1170788 ACOFKY_RS15490 WP_105713882.1 3349743..3350351(-) (ssb) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
ATGCGTGGTGTAAATAAAGTTATTTTAGTTGGTACTTTAGGTCGTGATCCTGAGACTAAAACTTTCCCAAATGGGGGTTC
TCTCACTCAATTTTCAATTGCGACAAGTGAATCTTGGACAGACAAAAATTCCGGTGAAAGAAAAGAACAAACGGAATGGC
ATCGTATTGTATTGCACAACCGTTTAGGTGAGATTGCACAGCAGTATTTACGTAAAGGTTCAAAAGTTTATATTGAAGGT
TCTTTACGTACCCGTCAGTGGACGGATCAAAATGGTCAAGAGCGCTATACCACTGAAATTCGTGGCGAACAAATGCAGAT
GCTTGACAACAACCGTCAACAAGGTGAAGGCGCTGCTGCTGACAATGGTGGTTATAACCAACCACGTTTCAATAACAACC
AGCAAGGTGGTTTTAACAACAACCAAGGTGGTGGCGGTTATGCGAATCAAGGTAATCAAGGTGGTGGTTACGGCAATGCC
AATCCACAAGGTGGCTATGGCAATGGCGGAAACAACGTAAATCAAGGTTTTCAATCGCCTAAACCTGCAGCTACACCATC
AGCACCTACTGCTGCCCCTGCGGATTTAGATGATGACTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.51

100

0.5
  ssb Vibrio cholerae strain A1552

42.927

100

0.436
  ssb Neisseria meningitidis MC58

38.462

100

0.396
  ssb Neisseria gonorrhoeae MS11

38

99.01

0.376

Multiple sequence alignment