Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOEQ4_RS09790 Genome accession   NZ_OZ240668
Coordinates   2114218..2114775 (-) Length   185 a.a.
NCBI ID   WP_419731394.1    Uniprot ID   -
Organism   MAG: Lichenicola sp. isolate 69eba9c6-ad22-4cc6-9875-327f7b8c911e     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2109218..2119775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOEQ4_RS09770 - 2110065..2110565 (-) 501 WP_419731391.1 peptidylprolyl isomerase -
  ACOEQ4_RS09775 coaD 2110591..2111097 (-) 507 WP_419731392.1 pantetheine-phosphate adenylyltransferase -
  ACOEQ4_RS09780 gyrA 2111252..2113981 (-) 2730 Protein_1915 DNA gyrase subunit A -
  ACOEQ4_RS09785 - 2114121..2114294 (-) 174 WP_419731393.1 leucine zipper domain-containing protein -
  ACOEQ4_RS09790 ssb 2114218..2114775 (-) 558 WP_419731394.1 single-stranded DNA-binding protein Machinery gene
  ACOEQ4_RS09795 uvrA 2114928..2117822 (+) 2895 WP_419731395.1 excinuclease ABC subunit UvrA -
  ACOEQ4_RS09800 - 2117858..2118736 (+) 879 WP_419731396.1 NAD(P)-dependent oxidoreductase -
  ACOEQ4_RS09805 - 2118840..2119607 (+) 768 WP_419731397.1 hypothetical protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19238.05 Da        Isoelectric Point: 5.9951

>NTDB_id=1170762 ACOEQ4_RS09790 WP_419731394.1 2114218..2114775(-) (ssb) [MAG: Lichenicola sp. isolate 69eba9c6-ad22-4cc6-9875-327f7b8c911e]
MAGSVNKVILVGNLGKDPEVRNAQNGTKIVNFTLATSESWNDKGSGERREKTEWHRVVVFNERIADVVERYCRKGKKVYV
EGSLQTRKWTDQSGQEKYTTEVVIDRFRGDLTLLDSGRGGGEEAGGEGGYGGSSGSYGGVAPKAVGGPRGGARAPSGGQG
GGGGSGGGSGGWEPAGGDLDDEIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1170762 ACOEQ4_RS09790 WP_419731394.1 2114218..2114775(-) (ssb) [MAG: Lichenicola sp. isolate 69eba9c6-ad22-4cc6-9875-327f7b8c911e]
ATGGCGGGCAGCGTCAACAAGGTGATCCTGGTCGGGAACCTGGGCAAGGACCCGGAGGTCCGGAACGCCCAGAACGGGAC
CAAGATCGTCAACTTCACCCTGGCGACCAGCGAGAGCTGGAACGACAAGGGCTCGGGCGAGCGGCGCGAGAAGACCGAGT
GGCACCGCGTGGTGGTGTTCAACGAGCGGATCGCCGACGTGGTCGAGCGGTATTGCCGCAAGGGCAAGAAGGTCTACGTC
GAAGGCTCGCTGCAGACACGCAAGTGGACCGACCAGTCCGGGCAGGAGAAGTACACCACCGAGGTGGTGATCGACCGGTT
CCGCGGCGACCTGACCCTGCTCGACTCCGGCCGCGGCGGCGGCGAGGAGGCCGGCGGCGAGGGCGGCTATGGCGGCAGCA
GCGGGAGCTATGGCGGCGTAGCGCCCAAGGCGGTCGGTGGCCCGCGCGGCGGCGCGCGGGCGCCATCCGGCGGCCAAGGC
GGTGGTGGAGGCAGCGGCGGTGGCAGCGGGGGCTGGGAGCCGGCTGGGGGCGACCTGGACGACGAGATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.907

100

0.492
  ssb Vibrio cholerae strain A1552

44.624

100

0.449
  ssb Neisseria meningitidis MC58

36.757

100

0.368
  ssb Neisseria gonorrhoeae MS11

36.216

100

0.362

Multiple sequence alignment