Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNALX_RS01350 Genome accession   NZ_OZ223210
Coordinates   266098..266646 (+) Length   182 a.a.
NCBI ID   WP_415719973.1    Uniprot ID   -
Organism   MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 261098..271646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNALX_RS01340 - 261129..262898 (-) 1770 WP_415719971.1 PglL family O-oligosaccharyltransferase -
  ACNALX_RS01345 uvrA 262986..265829 (-) 2844 WP_415719972.1 excinuclease ABC subunit UvrA -
  ACNALX_RS01350 ssb 266098..266646 (+) 549 WP_415719973.1 single-stranded DNA-binding protein Machinery gene
  ACNALX_RS01355 - 266812..268011 (-) 1200 WP_415719974.1 putative manganese transporter -
  ACNALX_RS01360 - 268349..269233 (-) 885 WP_047887022.1 LysR family transcriptional regulator -
  ACNALX_RS01365 csrD 269594..271537 (+) 1944 WP_415719975.1 RNase E specificity factor CsrD -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20035.19 Da        Isoelectric Point: 4.9269

>NTDB_id=1170624 ACNALX_RS01350 WP_415719973.1 266098..266646(+) (ssb) [MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5]
MASRGVNKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKNTGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRFSTEIVVQGYNGIMQMLGGRQGGQGMGAPMGGQQQQGGWGQPQQPPAAPQQQSYAPQQQSAPQ
QQPASQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1170624 ACNALX_RS01350 WP_415719973.1 266098..266646(+) (ssb) [MAG: Photobacterium ganghwense isolate daa05ea6-4f3f-4f7c-82d4-3ed073323da5]
ATGGCCAGTCGTGGCGTAAACAAGGTTATCCTGGTTGGTAACTTGGGTAATGATCCGGAAATCCGTTACATGCCGAGTGG
TGGTGCAGTTGCAAATATTACCGTTGCCACCTCTGAGACTTGGCGTGACAAAAACACCGGCGAGCAGCGTGAAAAAACAG
AATGGCACCGTGTAGTGCTGTTTGGTAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGCAAAGGTTCGCAAGTTTACATT
GAAGGTCAGCTGCAAACGCGTAAATGGCAAGACCAGAGCGGCCAGGATCGCTTCTCGACTGAAATCGTCGTGCAGGGTTA
CAACGGCATTATGCAAATGCTGGGTGGCCGTCAGGGTGGACAGGGTATGGGCGCCCCTATGGGTGGTCAGCAGCAGCAAG
GTGGTTGGGGACAGCCGCAGCAGCCACCTGCCGCACCGCAACAGCAGAGCTACGCGCCTCAGCAACAGTCTGCCCCACAA
CAGCAGCCTGCGTCTCAGCCTCAGTACAATGAGCCGCCAATGGATTTCGATGACGATATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.522

100

0.824
  ssb Glaesserella parasuis strain SC1401

53.061

100

0.571
  ssb Neisseria gonorrhoeae MS11

49.727

100

0.5
  ssb Neisseria meningitidis MC58

49.18

100

0.495

Multiple sequence alignment