Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNALS_RS20800 Genome accession   NZ_OZ223203
Coordinates   4534675..4535214 (+) Length   179 a.a.
NCBI ID   WP_412776292.1    Uniprot ID   -
Organism   MAG: Thalassospira lucentensis isolate 0767d9a9-0461-47d9-af6f-416ecad910e0     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4529675..4540214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNALS_RS20775 - 4529744..4531042 (+) 1299 WP_022730800.1 extracellular solute-binding protein -
  ACNALS_RS20780 - 4531125..4532003 (+) 879 WP_412776295.1 ABC transporter permease subunit -
  ACNALS_RS20785 ugpE 4532014..4532868 (+) 855 WP_102782701.1 sn-glycerol-3-phosphate ABC transporter permease UgpE -
  ACNALS_RS20790 - 4532928..4533998 (+) 1071 WP_412776294.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC -
  ACNALS_RS20795 - 4534141..4534614 (+) 474 WP_412776293.1 GAF domain-containing protein -
  ACNALS_RS20800 ssb 4534675..4535214 (+) 540 WP_412776292.1 single-stranded DNA-binding protein Machinery gene
  ACNALS_RS20805 - 4535336..4536208 (+) 873 WP_412776291.1 hypothetical protein -
  ACNALS_RS20810 - 4536302..4536706 (+) 405 WP_412776290.1 NUDIX domain-containing protein -
  ACNALS_RS20815 - 4536737..4537240 (-) 504 WP_412776289.1 YchJ family protein -
  ACNALS_RS20820 rpoH 4537872..4538741 (+) 870 WP_022730809.1 RNA polymerase sigma factor RpoH -
  ACNALS_RS20825 - 4538873..4539328 (-) 456 WP_412776288.1 NUDIX hydrolase -
  ACNALS_RS20830 - 4539321..4539590 (-) 270 WP_022730811.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18737.43 Da        Isoelectric Point: 5.0346

>NTDB_id=1170618 ACNALS_RS20800 WP_412776292.1 4534675..4535214(+) (ssb) [MAG: Thalassospira lucentensis isolate 0767d9a9-0461-47d9-af6f-416ecad910e0]
MAGSVNKVILVGNLGRDPEIRFTQAGKKIANFSIATSEQWRDRQSGERRERTEWHRIVVFNEGLADVVERFVKKGSKLYI
EGVLRTRKWQGQDGKDNYTTEIVLEGFNSNLTMLDSRGGEGGGMGGGSSSGGGYGSGGQDNGGNFGGGGSDAGWGNGGSS
SGGGSAPTGAPDLDDEIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1170618 ACNALS_RS20800 WP_412776292.1 4534675..4535214(+) (ssb) [MAG: Thalassospira lucentensis isolate 0767d9a9-0461-47d9-af6f-416ecad910e0]
ATGGCTGGCAGTGTCAATAAAGTCATTCTCGTCGGAAACCTCGGCCGCGACCCTGAAATCCGGTTCACCCAGGCTGGCAA
GAAAATCGCCAATTTCAGTATTGCGACCTCCGAACAGTGGCGAGACCGTCAGTCTGGTGAGCGCCGCGAGCGTACTGAAT
GGCACCGTATTGTTGTGTTCAACGAAGGTCTTGCAGATGTCGTAGAGCGCTTTGTTAAAAAAGGCAGCAAGCTTTACATC
GAAGGCGTGCTTCGGACCCGCAAATGGCAGGGGCAGGACGGCAAAGACAATTACACCACTGAAATTGTCCTGGAAGGCTT
CAACTCCAACCTGACCATGCTCGATAGTCGTGGCGGAGAAGGCGGCGGAATGGGTGGTGGATCGTCGTCTGGCGGCGGAT
ATGGCAGCGGCGGCCAGGACAATGGCGGCAACTTCGGTGGCGGCGGTTCTGACGCAGGCTGGGGCAACGGTGGTTCGTCC
TCTGGTGGTGGTTCCGCCCCGACTGGCGCCCCGGACCTTGATGACGAAATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.55

100

0.486
  ssb Vibrio cholerae strain A1552

43.75

98.324

0.43
  ssb Neisseria meningitidis MC58

38.122

100

0.385
  ssb Neisseria gonorrhoeae MS11

38.122

100

0.385

Multiple sequence alignment