Detailed information NTG1170557

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACMTA2_RS27980
• Genome accession: NZ_OZ221631
• Coordinates: 6345646..6346515 (+)
• Length: 289 a.a.
• NCBI ID: WP_413792677.1
• Uniprot ID: -
• Organism: Pseudomonas sp. N4 isolate ena-SAMPLE-TAB-27-01-2025-11:39:45:924-2052
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6340646..6351515

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMTA2_RS27955	-	6340845..6341141 (+)	297	WP_413792673.1	DUF2845 domain-containing protein	-
ACMTA2_RS27960	-	6341440..6341793 (-)	354	WP_411385653.1	BON domain-containing protein	-
ACMTA2_RS27965	-	6342080..6342499 (-)	420	WP_413792674.1	pilin	-
ACMTA2_RS27970	pilB	6342724..6344424 (+)	1701	WP_413792675.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACMTA2_RS27975	pilC	6344427..6345644 (+)	1218	WP_413792676.1	type II secretion system F family protein	Machinery gene
ACMTA2_RS27980	pilD	6345646..6346515 (+)	870	WP_413792677.1	prepilin peptidase	Machinery gene
ACMTA2_RS27985	coaE	6346515..6347138 (+)	624	WP_413792678.1	dephospho-CoA kinase	-
ACMTA2_RS27990	yacG	6347135..6347335 (+)	201	WP_041476151.1	DNA gyrase inhibitor YacG	-
ACMTA2_RS27995	-	6347434..6347649 (-)	216	WP_092333756.1	hypothetical protein	-
ACMTA2_RS28000	-	6347713..6348399 (-)	687	WP_413792679.1	energy-coupling factor ABC transporter permease	-
ACMTA2_RS28005	-	6348484..6349998 (-)	1515	WP_413792680.1	ABC transporter substrate-binding protein	-
ACMTA2_RS28010	-	6350028..6350999 (-)	972	WP_413792681.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31918.03 Da
• Isoelectric Point: 7.7094

>NTDB_id=1170557 ACMTA2_RS27980 WP_413792677.1 6345646..6346515(+) (pilD) [Pseudomonas sp. N4 isolate ena-SAMPLE-TAB-27-01-2025-11:39:45:924-2052]
MPLSEFLVLYPLAFVLVAALLGLIVGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCDHRIR
AWENIPVLSYVMLRGRCSNCAAPIGKRYPLTEVACGALSAFVAWHFGFGWQAATVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLDRAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AIIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=1170557 ACMTA2_RS27980 WP_413792677.1 6345646..6346515(+) (pilD) [Pseudomonas sp. N4 isolate ena-SAMPLE-TAB-27-01-2025-11:39:45:924-2052]
ATGCCCCTGAGCGAATTTCTCGTGCTGTACCCCCTGGCTTTCGTGCTCGTTGCGGCATTGCTCGGCCTGATCGTCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAAGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTCATGCTGCCCCATTCCCAGTGCCCGCACTGCGACCATCGCATCCGC
GCCTGGGAAAACATCCCCGTGCTCAGCTACGTGATGCTGCGCGGCCGCTGTTCGAACTGCGCCGCGCCTATCGGCAAGCG
TTATCCCCTGACCGAAGTGGCCTGCGGCGCGTTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGCGA
CGGTGATGGTGCTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGTTGTTGTGGCTGGGCCTGATCGTCAACAGCTTCGGGCTGTTCGTCTCCCTGGACCGGGCGATGTGGGGCGCGGT
GGCCGGGTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACAGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGTGGCTGGCAGATCCTGCCGTTGACGCTGCTGTTGTCGTCGCTGGTGGGC
GCCATTATCGGGGTCATTGTGCTGCGTCTGCGTGACGCCCCCGGATCGACACAGATCCCCTTCGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCGTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.113	98.27	0.512
pilD	Vibrio campbellii strain DS40M4	51.228	98.616	0.505
pilD	Acinetobacter baumannii D1279779	48.905	94.81	0.464
pilD	Neisseria gonorrhoeae MS11	46.341	99.308	0.46
pilD	Acinetobacter nosocomialis M2	48.175	94.81	0.457