Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMFWR_RS03275 Genome accession   NZ_OZ221287
Coordinates   776852..777406 (+) Length   184 a.a.
NCBI ID   WP_413193603.1    Uniprot ID   -
Organism   Pararobbsia alpina isolate ABIP432     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 771852..782406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMFWR_RS03265 (CAB432_A0739) uvrA 772482..775367 (-) 2886 WP_413193601.1 excinuclease ABC subunit UvrA -
  ACMFWR_RS03270 (CAB432_A0740) - 775464..776690 (+) 1227 WP_413193602.1 MFS transporter -
  ACMFWR_RS03275 (CAB432_A0741) ssb 776852..777406 (+) 555 WP_413193603.1 single-stranded DNA-binding protein Machinery gene
  ACMFWR_RS03280 (CAB432_A0742) - 777540..778802 (+) 1263 WP_413193604.1 tyrosine-type recombinase/integrase -
  ACMFWR_RS03285 (CAB432_A0743) - 778777..780321 (+) 1545 WP_413193605.1 site-specific integrase -
  ACMFWR_RS03290 (CAB432_A0744) - 780318..782324 (+) 2007 WP_413193606.1 integrase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 18833.60 Da        Isoelectric Point: 5.3476

>NTDB_id=1170512 ACMFWR_RS03275 WP_413193603.1 776852..777406(+) (ssb) [Pararobbsia alpina isolate ABIP432]
MASVNKVILVGNLGADPETRYLPSGDAVTNVRLATTDRFKDKASGDMKEMTEWHRVAFFGRLAEVAGEYLKKGSSVYVEG
RIRTRKWTDQSGQERYSTEIVGEQMQMLGGRGGMGAGGGDDGGYSREPMESRGGGGGGGGSRAPSGGGSRGGSGGGGGSN
PGGGGRSNAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1170512 ACMFWR_RS03275 WP_413193603.1 776852..777406(+) (ssb) [Pararobbsia alpina isolate ABIP432]
ATGGCATCCGTCAATAAAGTCATTCTGGTCGGCAACCTCGGTGCCGATCCGGAAACGCGGTATCTGCCGAGCGGCGATGC
CGTGACCAACGTGCGACTCGCAACGACTGACCGGTTCAAGGACAAGGCGTCGGGCGATATGAAGGAAATGACCGAATGGC
ACCGCGTGGCGTTCTTCGGTCGTCTGGCCGAGGTCGCGGGCGAGTACTTGAAGAAGGGTTCGTCGGTGTATGTCGAAGGC
CGGATTCGTACGCGCAAGTGGACCGATCAATCGGGGCAAGAGCGTTACTCGACCGAAATCGTCGGTGAGCAAATGCAGAT
GCTGGGCGGCCGTGGCGGCATGGGCGCCGGCGGTGGCGATGACGGCGGTTACAGCCGTGAGCCGATGGAATCGCGCGGCG
GTGGCGGCGGTGGTGGCGGTTCGCGCGCACCGTCGGGTGGCGGCAGCCGTGGTGGTTCGGGTGGCGGTGGCGGCTCGAAC
CCGGGCGGCGGCGGCCGTTCGAATGCGCCGGCCGGCGGCGGGTTCGACGAGATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.515

100

0.533
  ssb Glaesserella parasuis strain SC1401

47.568

100

0.478
  ssb Neisseria meningitidis MC58

41.304

100

0.413
  ssb Neisseria gonorrhoeae MS11

41.304

100

0.413

Multiple sequence alignment