Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMD9A_RS16585 Genome accession   NZ_OZ220752
Coordinates   3624388..3624927 (-) Length   179 a.a.
NCBI ID   WP_412776292.1    Uniprot ID   -
Organism   MAG: Thalassospira lucentensis isolate 52b4f5f3-412f-4693-a175-4ddbe4310627     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3619388..3629927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMD9A_RS16555 - 3620012..3620281 (+) 270 WP_022730811.1 hypothetical protein -
  ACMD9A_RS16560 - 3620274..3620729 (+) 456 WP_412776288.1 NUDIX hydrolase -
  ACMD9A_RS16565 rpoH 3620861..3621730 (-) 870 WP_022730809.1 RNA polymerase sigma factor RpoH -
  ACMD9A_RS16570 - 3622362..3622865 (+) 504 WP_412776289.1 YchJ family protein -
  ACMD9A_RS16575 - 3622896..3623300 (-) 405 WP_412776290.1 NUDIX domain-containing protein -
  ACMD9A_RS16580 - 3623394..3624266 (-) 873 WP_412776291.1 hypothetical protein -
  ACMD9A_RS16585 ssb 3624388..3624927 (-) 540 WP_412776292.1 single-stranded DNA-binding protein Machinery gene
  ACMD9A_RS16590 - 3624988..3625461 (-) 474 WP_412776293.1 GAF domain-containing protein -
  ACMD9A_RS16595 - 3625604..3626674 (-) 1071 WP_412776294.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC -
  ACMD9A_RS16600 ugpE 3626734..3627588 (-) 855 WP_102782701.1 sn-glycerol-3-phosphate ABC transporter permease UgpE -
  ACMD9A_RS16605 - 3627599..3628477 (-) 879 WP_412776295.1 ABC transporter permease subunit -
  ACMD9A_RS16610 - 3628560..3629858 (-) 1299 WP_022730800.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18737.43 Da        Isoelectric Point: 5.0346

>NTDB_id=1170508 ACMD9A_RS16585 WP_412776292.1 3624388..3624927(-) (ssb) [MAG: Thalassospira lucentensis isolate 52b4f5f3-412f-4693-a175-4ddbe4310627]
MAGSVNKVILVGNLGRDPEIRFTQAGKKIANFSIATSEQWRDRQSGERRERTEWHRIVVFNEGLADVVERFVKKGSKLYI
EGVLRTRKWQGQDGKDNYTTEIVLEGFNSNLTMLDSRGGEGGGMGGGSSSGGGYGSGGQDNGGNFGGGGSDAGWGNGGSS
SGGGSAPTGAPDLDDEIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1170508 ACMD9A_RS16585 WP_412776292.1 3624388..3624927(-) (ssb) [MAG: Thalassospira lucentensis isolate 52b4f5f3-412f-4693-a175-4ddbe4310627]
ATGGCTGGCAGTGTCAATAAAGTCATTCTCGTCGGAAACCTCGGCCGCGACCCTGAAATCCGGTTCACCCAGGCTGGCAA
GAAAATCGCCAATTTCAGTATTGCGACCTCCGAACAGTGGCGAGACCGTCAGTCTGGTGAGCGCCGCGAGCGTACTGAAT
GGCACCGTATTGTTGTGTTCAACGAAGGTCTTGCAGATGTCGTAGAGCGCTTTGTTAAAAAAGGCAGCAAGCTTTACATC
GAAGGCGTGCTTCGGACCCGCAAATGGCAGGGGCAGGACGGCAAAGACAATTACACCACTGAAATTGTCCTGGAAGGCTT
CAACTCCAACCTGACCATGCTCGATAGTCGTGGCGGAGAAGGCGGCGGAATGGGTGGTGGATCGTCGTCTGGCGGCGGAT
ATGGCAGCGGCGGCCAGGACAATGGCGGCAACTTCGGTGGCGGCGGTTCTGACGCAGGCTGGGGCAACGGTGGTTCGTCC
TCTGGTGGTGGTTCCGCCCCGACTGGCGCCCCGGACCTTGATGACGAAATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.55

100

0.486
  ssb Vibrio cholerae strain A1552

43.75

98.324

0.43
  ssb Neisseria meningitidis MC58

38.122

100

0.385
  ssb Neisseria gonorrhoeae MS11

38.122

100

0.385

Multiple sequence alignment