Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7W_RS06485 Genome accession   NZ_OZ217346
Coordinates   1335608..1337614 (-) Length   668 a.a.
NCBI ID   WP_411865656.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis D22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1330608..1342614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS06470 (SMID22_13280) - 1331418..1332404 (+) 987 WP_000204728.1 L-lactate dehydrogenase -
  ACLV7W_RS06475 (SMID22_13290) - 1333105..1334334 (-) 1230 WP_411865655.1 tetratricopeptide repeat protein -
  ACLV7W_RS06480 (SMID22_13300) - 1334324..1335490 (-) 1167 WP_261037043.1 AI-2E family transporter -
  ACLV7W_RS06485 (SMID22_13310) amiA3 1335608..1337614 (-) 2007 WP_411865656.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7W_RS06490 (SMID22_13320) - 1337790..1338803 (+) 1014 WP_411865657.1 lactonase family protein -
  ACLV7W_RS06495 - 1339001..1339186 (-) 186 Protein_1267 hypothetical protein -
  ACLV7W_RS06500 (SMID22_13340) - 1339147..1340673 (+) 1527 WP_411865658.1 IS1182 family transposase -
  ACLV7W_RS06505 (SMID22_13350) - 1340798..1342054 (+) 1257 WP_411865659.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 73546.01 Da        Isoelectric Point: 5.0951

>NTDB_id=1170449 ACLV7W_RS06485 WP_411865656.1 1335608..1337614(-) (amiA3) [Streptococcus mitis isolate S. mitis D22]
MKKRVFLAAGVAVLSAAVLVACSSGNGNKEATKEATKQATKPVTYAYVFSLDPVTLDYTVSGNVSTKQITGNVIDGLLEN
DQYGNLVPSVAEDWTVSKDGLTYTYKIRQGVKWYTNEGEEYGEVKAQDFVTGLKHAADKKSQALYLVQDSIKGLDDYVNG
KTTDFSTVGVKATDDYTVVYTLNHPESFWNSKTTMGVLAPVSGDFLASKGDDFGKATDVTSILYNGAYLLKGLTSKSSIE
MTKNQNYWDKQNVFIDDIKLSFFDGQDADSLGRGFDEGHYPAAPLFKNSANYERLKEKYKDNIVYGQQRGGVFYMSTNID
RVSYNHTAKTSDVEKSSTKKALLNKDFRQALAFAVDRKAGISQVFGDEVGPRKLRTSFTPPTFVQVGDQTFGQVTKIELD
KLDNVWKDVSLDDAQDSLHNVDKAKAKFESAKKTLQADGVQFPIHLDLPVSSIQTDFIHQAQSYKQSIEEALGSENVVVD
IQQVSDDELGNMTVLATSNNNVDWDINVNSGWSPDYADPSTYLDVFDPTSGPSLLGSLGVAPGTDNPAIKTVGLDKYKGL
IDDANSEKTDLQKRYSKYAKAQAWLTDSALVIPVHSDGAQMLVTKKVLGSGADGWIGDKTGDNSYKYLKLQDKIVTSKEM
DEFRKKFADEKGKSNADYQKNLDRHIQD

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=1170449 ACLV7W_RS06485 WP_411865656.1 1335608..1337614(-) (amiA3) [Streptococcus mitis isolate S. mitis D22]
ATGAAAAAACGTGTTTTCTTAGCAGCAGGAGTTGCTGTACTCTCGGCAGCAGTGCTAGTAGCGTGTTCATCTGGTAATGG
TAATAAAGAAGCAACTAAAGAAGCAACTAAACAAGCAACTAAACCAGTTACTTATGCCTATGTATTCTCATTAGATCCTG
TTACTTTGGATTATACAGTTTCTGGTAATGTCAGCACTAAACAGATTACAGGTAATGTTATTGATGGATTATTAGAAAAT
GATCAATATGGGAATCTGGTCCCATCAGTTGCAGAAGATTGGACTGTTTCCAAAGATGGTTTGACCTATACCTATAAAAT
CCGTCAGGGTGTCAAGTGGTATACCAATGAGGGAGAGGAGTATGGTGAAGTTAAGGCTCAGGATTTTGTAACTGGTCTTA
AGCATGCAGCTGATAAGAAATCACAGGCTCTCTATTTGGTACAGGATTCTATCAAAGGATTGGATGACTATGTAAATGGG
AAAACAACAGATTTCTCAACCGTAGGCGTGAAAGCAACAGATGATTATACTGTTGTTTATACTTTGAACCATCCAGAATC
TTTCTGGAATTCAAAAACAACAATGGGAGTCCTTGCTCCCGTGAGTGGAGATTTTTTGGCATCTAAAGGAGATGATTTTG
GTAAGGCCACTGATGTAACGAGTATACTATACAATGGGGCATATCTTCTTAAGGGGCTTACTTCGAAATCTTCTATCGAA
ATGACCAAAAACCAAAATTACTGGGATAAGCAAAATGTCTTTATTGATGATATCAAGTTATCATTCTTTGATGGTCAAGA
TGCAGACTCTCTAGGACGTGGTTTTGATGAGGGACATTATCCAGCTGCTCCACTCTTTAAAAACTCTGCCAACTATGAAC
GTCTAAAAGAAAAATACAAGGATAATATTGTATATGGTCAACAAAGAGGTGGCGTATTCTATATGTCTACTAATATTGAT
CGTGTGTCATACAATCATACTGCTAAAACAAGTGATGTAGAAAAATCCTCTACTAAGAAAGCACTTTTAAACAAAGATTT
CCGTCAAGCCTTGGCATTTGCGGTAGATCGTAAAGCAGGGATCTCTCAAGTATTTGGTGATGAAGTAGGACCTCGTAAGT
TACGGACAAGTTTCACTCCTCCAACATTTGTTCAAGTAGGAGATCAAACATTTGGTCAAGTAACTAAGATAGAATTGGAT
AAATTGGATAATGTCTGGAAAGATGTCAGTCTTGATGATGCGCAAGATTCACTTCATAACGTAGACAAGGCTAAAGCTAA
GTTTGAATCTGCTAAGAAAACTCTTCAAGCTGATGGAGTACAGTTCCCAATTCATTTAGATCTTCCAGTTTCATCGATTC
AGACAGATTTTATCCATCAAGCTCAGTCTTATAAACAATCCATTGAAGAAGCCTTGGGCTCTGAAAATGTAGTTGTTGAT
ATTCAACAGGTTTCTGATGATGAATTGGGAAACATGACTGTTCTAGCAACATCAAATAATAATGTTGATTGGGACATTAA
TGTTAATAGTGGTTGGAGTCCAGATTATGCAGATCCATCAACTTATCTAGATGTATTTGATCCAACTTCAGGTCCAAGTC
TCCTCGGCTCTCTTGGTGTAGCACCAGGAACAGACAATCCAGCCATTAAAACAGTTGGATTGGATAAATACAAAGGATTG
ATTGATGATGCAAATAGTGAAAAAACAGATCTGCAAAAACGTTATTCTAAATATGCTAAGGCGCAAGCTTGGTTAACAGA
TAGTGCTCTAGTTATTCCTGTACACTCAGACGGTGCCCAAATGTTAGTAACGAAGAAAGTATTAGGTAGTGGTGCTGATG
GTTGGATTGGTGACAAAACAGGAGATAACAGTTATAAATATCTTAAACTCCAAGATAAAATTGTCACTTCCAAAGAAATG
GATGAGTTCCGCAAGAAATTTGCTGATGAAAAAGGCAAATCCAATGCTGATTATCAGAAGAACTTAGACCGTCATATTCA
AGACTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(86-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.881

100

0.54
  amiA3 Streptococcus thermophilus LMG 18311

53.433

100

0.536
  amiA Streptococcus salivarius strain HSISS4

53.214

100

0.533

Multiple sequence alignment