Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7W_RS03575 Genome accession   NZ_OZ217346
Coordinates   733481..735487 (+) Length   668 a.a.
NCBI ID   WP_411865443.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis D22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 728481..740487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS03555 (SMID22_07300) - 729450..730328 (+) 879 WP_000301224.1 F0F1 ATP synthase subunit gamma -
  ACLV7W_RS03560 (SMID22_07310) atpD 730414..731820 (+) 1407 WP_000094357.1 F0F1 ATP synthase subunit beta -
  ACLV7W_RS03565 (SMID22_07320) - 731831..732250 (+) 420 WP_000068037.1 F0F1 ATP synthase subunit epsilon -
  ACLV7W_RS03570 (SMID22_07330) - 732295..733308 (-) 1014 WP_411865442.1 lactonase family protein -
  ACLV7W_RS03575 (SMID22_07340) amiA3 733481..735487 (+) 2007 WP_411865443.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7W_RS03580 (SMID22_07350) - 735605..736771 (+) 1167 WP_261037043.1 AI-2E family transporter -
  ACLV7W_RS03585 (SMID22_07360) - 736761..737990 (+) 1230 WP_411865444.1 tetratricopeptide repeat protein -
  ACLV7W_RS03590 (SMID22_07370) - 738131..738772 (+) 642 WP_411865445.1 amino acid ABC transporter permease -
  ACLV7W_RS03595 (SMID22_07380) - 738782..739411 (+) 630 WP_227325757.1 amino acid ABC transporter ATP-binding protein -
  ACLV7W_RS03600 (SMID22_07390) - 739421..740260 (+) 840 WP_227325758.1 amino acid ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 73491.88 Da        Isoelectric Point: 5.0951

>NTDB_id=1170436 ACLV7W_RS03575 WP_411865443.1 733481..735487(+) (amiA3) [Streptococcus mitis isolate S. mitis D22]
MKKRVFLAAGVAVLSAAVLAACSSGNANKEATKEATKQATKPVTYAYVFSLDPVTLDYTVSGNVSTKQITGNVIDGLLEN
DQYGNLVPSVAEDWTVSKDGLTYTYKIRQGVKWYTNEGEEYGEVKAQDFVTGLKHAADKKSQALYLVQDSIKGLDDYVNG
KTTDFSTVGVKATDDYTVVYTLNHPESFWNSKTTMGVLAPVSGDFLASKGDDFGKATDVTSILYNGAYLLKGLTSKSSIE
MTKNQNYWDKQNVFIDDIKLSFFDGQDADSLGRGFDEGHYPAAPLFKNSANYERLKEKYKDNIVYGQQRGGVFYMSTNID
RVSYNHTAKTSDVEKSSTKKALLNKDFRQALAFAADRKAAVSQVFGDEVAPRKLRTSFTPPTFVQVGDQSFGQVTKIELD
KLDNVWKDVSLDDAQDSLHNVDKAKAKFESAKKTLQADGVQFPIHLDLPVSSTQTDFIHQAQSYKQSIEEALGSENVVVD
IQQVSDDELGNMTVLATSNNNVDWDINVNSGWSPDYADPSTYLDVFDPTSGPSLLGSLGVAPGTDNPAIKTVGLDKYKGL
IDDANSEKTDLQKRYSKYAKAQAWLTDSALVIPVHSDGAQMLVTKKVLGSGADGWIGDKTGDNSYKYLKLQDKIVTSKEM
DEFRKKFADEKGKSNADYQKNLDRHIQD

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=1170436 ACLV7W_RS03575 WP_411865443.1 733481..735487(+) (amiA3) [Streptococcus mitis isolate S. mitis D22]
ATGAAAAAACGTGTTTTCTTAGCAGCAGGAGTTGCTGTACTCTCGGCAGCTGTCCTAGCCGCGTGTTCATCTGGTAATGC
TAATAAAGAAGCAACTAAAGAAGCAACTAAACAAGCAACTAAACCAGTTACTTATGCCTATGTATTCTCATTAGATCCTG
TTACTTTGGATTATACAGTTTCTGGTAATGTCAGCACTAAACAGATTACAGGTAATGTTATTGATGGATTATTAGAAAAT
GATCAATATGGGAATCTGGTCCCATCAGTTGCAGAAGATTGGACTGTTTCCAAAGATGGTTTGACCTATACCTATAAAAT
CCGTCAGGGTGTCAAGTGGTATACCAATGAGGGAGAGGAGTATGGTGAAGTTAAGGCTCAGGATTTTGTAACTGGTCTTA
AGCATGCAGCTGATAAGAAATCACAGGCTCTCTATTTGGTACAGGATTCTATCAAAGGATTGGATGACTATGTAAATGGG
AAAACAACAGATTTCTCAACCGTAGGCGTGAAAGCAACAGATGATTATACTGTTGTTTATACTTTGAACCATCCAGAATC
TTTCTGGAATTCAAAAACAACAATGGGAGTCCTTGCTCCCGTGAGTGGAGATTTTTTGGCATCTAAAGGAGATGATTTTG
GTAAGGCCACTGATGTAACGAGTATACTATACAATGGGGCATATCTTCTTAAGGGGCTTACTTCGAAATCTTCTATCGAA
ATGACCAAAAACCAAAATTACTGGGATAAGCAAAATGTCTTTATTGATGATATCAAGTTATCATTCTTTGATGGTCAAGA
TGCAGACTCTCTAGGACGTGGTTTTGATGAGGGACATTATCCAGCTGCTCCACTCTTTAAAAACTCTGCCAACTATGAAC
GTCTAAAAGAAAAATACAAGGATAATATTGTATATGGTCAACAAAGAGGTGGCGTATTCTATATGTCTACTAATATTGAT
CGTGTGTCATACAATCATACTGCTAAAACAAGTGATGTAGAAAAATCCTCTACTAAGAAAGCACTTTTAAACAAAGATTT
CCGTCAAGCCTTGGCATTTGCTGCAGATCGTAAAGCAGCTGTTTCTCAGGTGTTTGGGGATGAAGTGGCGCCTCGTAAAT
TACGTACAAGTTTCACTCCTCCAACATTTGTACAAGTTGGAGACCAATCGTTTGGTCAAGTAACTAAGATAGAATTGGAT
AAATTGGATAATGTCTGGAAAGATGTCAGTCTTGATGATGCGCAAGATTCACTTCATAACGTAGACAAGGCTAAAGCTAA
GTTTGAATCTGCTAAGAAAACTCTTCAAGCTGATGGAGTACAGTTCCCAATTCATTTAGATCTTCCAGTTTCATCGACTC
AGACAGATTTTATCCATCAAGCTCAGTCTTATAAACAATCCATTGAAGAAGCCTTGGGCTCTGAAAATGTAGTTGTTGAC
ATTCAACAGGTTTCTGATGATGAATTGGGAAACATGACTGTTCTAGCGACATCAAATAATAATGTTGATTGGGACATTAA
TGTTAATAGTGGTTGGAGTCCGGATTATGCAGATCCATCAACTTATCTAGATGTATTTGATCCAACTTCAGGTCCAAGTC
TCCTCGGCTCTCTTGGTGTAGCACCGGGAACAGACAATCCAGCCATTAAAACAGTTGGATTGGATAAATACAAAGGATTG
ATTGATGATGCAAATAGTGAAAAAACAGATCTGCAAAAACGTTATTCTAAATATGCTAAGGCGCAAGCTTGGTTAACAGA
TAGTGCTCTAGTTATTCCTGTACACTCAGACGGTGCCCAAATGTTAGTAACGAAGAAAGTATTAGGTAGTGGTGCTGATG
GTTGGATTGGTGACAAAACAGGAGATAACAGTTATAAATATCTTAAACTCCAAGATAAAATTGTCACTTCCAAAGAAATG
GATGAGTTCCGCAAGAAATTTGCTGATGAAAAAGGCAAATCCAATGCTGATTATCAGAAGAACTTAGACCGTCATATTCA
AGACTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(86-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.03

100

0.542
  amiA3 Streptococcus thermophilus LMG 18311

53.582

100

0.537
  amiA Streptococcus salivarius strain HSISS4

53.363

100

0.534

Multiple sequence alignment