Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7D_RS08700 Genome accession   NZ_OZ217345
Coordinates   1819933..1821891 (-) Length   652 a.a.
NCBI ID   WP_218764839.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1814933..1826891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS08690 (SMIF22_17240) amiA 1816285..1818264 (-) 1980 WP_218764841.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7D_RS08695 (SMIF22_17250) glf 1818501..1819601 (-) 1101 WP_218764840.1 UDP-galactopyranose mutase -
  ACLV7D_RS08700 (SMIF22_17260) amiA3 1819933..1821891 (-) 1959 WP_218764839.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7D_RS08705 (SMIF22_17270) - 1822087..1823694 (-) 1608 WP_218764838.1 glycoside hydrolase family 13 protein -
  ACLV7D_RS08710 (SMIF22_17280) - 1823847..1825331 (+) 1485 WP_218764837.1 DUF1846 domain-containing protein -
  ACLV7D_RS08715 (SMIF22_17290) - 1825426..1825908 (+) 483 WP_050389404.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72581.69 Da        Isoelectric Point: 4.9852

>NTDB_id=1170391 ACLV7D_RS08700 WP_218764839.1 1819933..1821891(-) (amiA3) [Streptococcus mitis isolate S. mitis F22]
MTTKKRILSAGLTVAAALLLTACGQSGSDTKTYSSTFSGNPTTFNYLLDYYADNTSIITNLVDGLLENDNHGNLVPSLAE
DWSVSSDGLTYTYKLRKDAKWFTADGEEYAPVKAQDFVTGIKYAVDNKSQAIDLIQNSIKGLNDYITGADSDFSKVGVKA
IDDQTVEYTLARPEPYWNSKTTNSILFPVNEEFLNSKGKDFGTLSPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDHDKV
SIEHVKLAYFDGSDQELTIRNFESGAYSIAGVYPNSSNFAKTKEKYKDNIVYSLQDKTSWYFNFNVNRKAYNHTSKTTDE
QKKSTETAVLNKNFRQAVNFALDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVVASKLVNYGTEWSGINLAD
AQDAYFNKEKAQAKFVEAKKELASQGVTFPIHLDVAVDQTSKNAVTGMNSVKQTLESVLGADNVVIDVQQLSTDDFNNVA
FLAPTAADRDYDLNFDGWVGDYQDPSTYLNPFNAEDGFYLKIFGLDAKEDKEKITSLGLDTYTKMLKDADSENKDVAKRY
EKYAEAQAWMIDNSLIMSAMSSGGTASVTKVTPFTRGYSLVGIKGDGNNYKYMKLQKDTVTTKQFEEAKTKWEQESKKAI
EKAQKEAEKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1170391 ACLV7D_RS08700 WP_218764839.1 1819933..1821891(-) (amiA3) [Streptococcus mitis isolate S. mitis F22]
ATGACTACAAAAAAGCGTATCCTTAGTGCAGGCCTGACTGTTGCAGCTGCCTTGCTTTTAACTGCTTGCGGACAATCAGG
TTCAGATACAAAAACTTACTCATCAACCTTTAGTGGAAATCCAACTACATTTAACTACTTGTTAGACTACTACGCTGATA
ATACATCGATTATCACCAACCTAGTTGATGGTTTGCTTGAAAATGACAACCACGGAAACCTAGTTCCATCTTTGGCAGAA
GACTGGTCTGTTTCAAGCGACGGTCTGACTTACACCTATAAACTGAGAAAAGATGCCAAATGGTTCACAGCTGACGGTGA
AGAGTATGCCCCAGTCAAGGCACAAGATTTTGTGACAGGTATCAAGTACGCAGTGGATAATAAATCCCAGGCCATTGACT
TGATTCAAAACTCGATCAAGGGCTTGAATGATTATATTACAGGAGCGGATTCTGACTTTTCTAAGGTTGGGGTGAAGGCC
ATTGACGACCAGACTGTTGAGTATACTTTGGCACGTCCAGAGCCTTACTGGAATTCAAAAACAACCAATAGTATTCTTTT
CCCAGTAAACGAAGAGTTTTTAAACTCAAAAGGGAAAGATTTTGGGACCCTATCTCCAGATAGCATTCTCTACAGTGGAC
CTTATTTGTTAAAAGATTTCACATCAAAATCATCGATCGAGTATGTGAAAAATCCGCATTACTACGATCATGACAAAGTA
TCAATTGAACACGTAAAATTGGCTTACTTTGACGGCTCAGACCAAGAATTGACCATCCGTAACTTTGAAAGTGGAGCTTA
TTCAATCGCTGGGGTTTATCCAAATAGTTCAAACTTTGCTAAGACTAAGGAAAAATATAAGGATAATATCGTCTATAGCT
TGCAGGACAAGACTTCTTGGTACTTCAATTTTAACGTCAACCGTAAGGCTTACAACCATACGTCTAAAACGACAGATGAG
CAGAAGAAGTCAACTGAGACAGCTGTCTTGAACAAGAACTTCCGCCAAGCGGTGAACTTTGCCTTGGACCGCACAGCCTA
TTCTGCCCAGTCAAATGGAGAAGAGGCGGCTAGCAAGACCCTTCGGAACACCTTGGTGCCTCCTACATTTGTCCAAGTTG
GAGACAAGACCTTTGGAGAAGTAGTCGCTTCTAAATTGGTCAACTATGGCACAGAATGGTCAGGTATTAACTTGGCAGAT
GCTCAGGATGCCTATTTCAACAAAGAAAAAGCCCAAGCAAAATTTGTGGAAGCTAAAAAAGAATTGGCAAGTCAAGGTGT
GACTTTCCCTATTCACTTGGATGTGGCGGTTGATCAGACAAGTAAAAATGCCGTGACAGGTATGAACTCAGTTAAGCAGA
CCCTTGAGTCAGTTTTAGGTGCTGATAACGTTGTCATTGATGTTCAGCAACTTTCAACAGATGATTTTAATAATGTAGCC
TTCTTAGCGCCAACAGCAGCTGATCGTGACTATGATTTGAACTTTGATGGCTGGGTAGGTGACTACCAAGATCCATCAAC
TTATCTCAATCCTTTCAATGCAGAGGATGGCTTCTACCTTAAGATTTTTGGACTAGATGCCAAGGAAGACAAGGAAAAAA
TCACTAGTCTAGGTCTGGATACCTACACTAAGATGCTCAAAGATGCAGATAGTGAAAACAAAGATGTAGCTAAACGTTAC
GAAAAATATGCTGAAGCACAGGCTTGGATGATTGACAATTCTCTGATTATGTCAGCTATGTCAAGTGGTGGAACAGCATC
TGTAACCAAAGTAACGCCATTTACAAGAGGCTATTCGTTGGTTGGTATCAAGGGTGATGGCAATAACTACAAGTACATGA
AACTGCAAAAAGACACTGTTACAACTAAACAGTTTGAAGAAGCTAAGACCAAATGGGAGCAAGAAAGCAAAAAAGCAATC
GAAAAAGCCCAAAAAGAAGCAGAAAAACATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

50.381

100

0.508
  amiA3 Streptococcus thermophilus LMG 18311

49.924

100

0.503
  amiA Streptococcus salivarius strain HSISS4

49.848

100

0.502

Multiple sequence alignment