Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV7D_RS08690 Genome accession   NZ_OZ217345
Coordinates   1816285..1818264 (-) Length   659 a.a.
NCBI ID   WP_218764841.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1811285..1823264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS08670 (SMIF22_17200) gpsB 1812360..1812701 (-) 342 WP_000146532.1 cell division regulator GpsB -
  ACLV7D_RS08675 (SMIF22_17210) - 1812771..1813298 (-) 528 WP_050216108.1 DUF1273 domain-containing protein -
  ACLV7D_RS08680 (SMIF22_17220) recU 1813365..1813961 (+) 597 WP_000248774.1 Holliday junction resolvase RecU -
  ACLV7D_RS08685 (SMIF22_17230) pbp1a 1813958..1816120 (+) 2163 WP_218764842.1 penicillin-binding protein PBP1A -
  ACLV7D_RS08690 (SMIF22_17240) amiA 1816285..1818264 (-) 1980 WP_218764841.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7D_RS08695 (SMIF22_17250) glf 1818501..1819601 (-) 1101 WP_218764840.1 UDP-galactopyranose mutase -
  ACLV7D_RS08700 (SMIF22_17260) amiA3 1819933..1821891 (-) 1959 WP_218764839.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72706.46 Da        Isoelectric Point: 4.8239

>NTDB_id=1170390 ACLV7D_RS08690 WP_218764841.1 1816285..1818264(-) (amiA) [Streptococcus mitis isolate S. mitis F22]
MKTRKVLALAGVTLLAAGVLAACSGGSGAQGEKTFAFTYETHPDNLNYLTTGKAATSEITSNVIDGLLENDKYGNLIPSM
AEDWSVSKDGLTYTYKIRQDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKAEALYLVQDSIKGLDAYAKGEITDFAQVGI
KALDDQTVQYTLNKPETFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSLLYNGPYLLKSIVTKSSVEFAKNPNYWDK
DNVHIDKVKLSFWDGQDTSKPAENFKDGSLTAARLYPTSASFAELEKSMKDNIVYTQQDSTTYLVGTNIDRQSYKHTSKT
SDEQKTSTKKALLNKDFRQAIAFGFDRTAYASQLNGQTGASKILRNIFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDVN
LADAQDGLYNPEKAKAEFAKAKSALQAEGVQFPIHLDMPVDQTATTKVQRVQSMKQSLEATLGTDNVVIDIQQLQKDELL
NVTLFAETAAGEDWDLSDNVGWGPDFADPSTYLDIIKPSVGESTKTYLGFDSGEDNVAAKKVGLYDYEKLVTEAGDETTD
VAKRYDKYAAAQAWLTDSALIIPTTSKTGRPILSKMVPFTIPFALSGNKGTSDPVLYKYLELQDKAVTADEYQKAQEKWM
KEKAESNKKAQEELAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1170390 ACLV7D_RS08690 WP_218764841.1 1816285..1818264(-) (amiA) [Streptococcus mitis isolate S. mitis F22]
ATGAAAACAAGAAAAGTATTGGCTCTTGCGGGAGTAACCTTATTAGCAGCTGGTGTTTTAGCTGCTTGTTCTGGGGGTTC
AGGCGCTCAAGGTGAAAAAACCTTTGCCTTTACCTACGAGACACATCCAGATAATCTCAACTATTTGACAACTGGTAAGG
CAGCAACTTCTGAGATTACTAGTAATGTGATCGATGGATTACTTGAAAATGATAAATACGGGAACCTTATTCCCTCAATG
GCAGAAGACTGGTCGGTCTCTAAGGATGGCTTGACTTATACTTATAAGATTCGTCAGGATGCCAAGTGGTATACATCTGA
GGGAGAAGAGTACGCTCCTGTTAAGGCTCAGGACTTTGTAACAGGACTTAAATATGCAACAGATAAGAAAGCAGAAGCCC
TTTACTTGGTACAGGATTCAATCAAAGGTCTGGATGCCTATGCCAAAGGTGAAATCACAGACTTTGCTCAAGTCGGGATT
AAAGCCCTTGACGATCAGACAGTCCAATACACCTTGAACAAACCTGAAACTTTTTGGAATTCTAAAACAACCATGGGTGT
GCTTGCGCCAGTCAATGAAGAGTTTTTGAATTCAAAAGGGGATGATTTTGCCAAAGCTACGGATCCAAGTAGTCTCTTGT
ATAACGGCCCTTATTTGTTGAAATCCATTGTAACTAAATCCTCTGTTGAATTTGCGAAAAATCCGAACTACTGGGATAAA
GACAATGTGCATATTGACAAGGTCAAATTGTCATTCTGGGATGGGCAAGATACCAGCAAACCAGCAGAAAACTTTAAAGA
TGGTAGCCTTACAGCAGCTCGTCTTTATCCAACAAGTGCAAGTTTCGCAGAGCTTGAGAAGAGTATGAAAGACAATATTG
TCTATACTCAACAAGACTCTACGACTTATTTAGTAGGAACAAATATTGACCGTCAATCTTATAAACACACATCTAAGACT
AGCGACGAACAAAAGACATCTACTAAAAAAGCTCTCTTAAACAAGGATTTCCGTCAGGCTATTGCCTTTGGTTTTGACCG
TACAGCTTATGCTTCTCAGCTAAACGGACAAACTGGGGCAAGCAAAATTTTGCGTAATATTTTTGTTCCGCCAACATTTG
TCCAAGCAGATGGTAAGAACTTTGGTGATATGGTCAAAGAAAAATTGGTGACTTACGGGGATGAATGGAAGGATGTGAAC
CTTGCTGATGCCCAAGATGGACTCTACAATCCTGAAAAAGCTAAAGCAGAATTTGCCAAAGCCAAATCAGCCCTACAAGC
TGAGGGAGTACAATTCCCAATTCACCTAGATATGCCTGTTGACCAAACAGCAACTACAAAAGTTCAACGTGTCCAATCTA
TGAAACAATCCTTGGAAGCAACTTTAGGAACTGATAATGTCGTTATTGATATCCAACAATTGCAAAAAGATGAATTGCTT
AATGTAACTCTATTTGCAGAAACTGCTGCTGGCGAAGACTGGGATTTATCAGATAATGTCGGTTGGGGTCCAGACTTTGC
CGATCCATCAACCTACCTTGATATTATCAAACCTTCTGTAGGAGAAAGTACTAAAACATATTTAGGATTTGACTCAGGGG
AAGATAATGTAGCTGCTAAAAAAGTAGGTCTATATGACTACGAAAAATTGGTTACTGAAGCTGGTGATGAGACTACAGAT
GTTGCTAAACGATATGATAAATACGCAGCAGCCCAAGCTTGGTTGACAGATAGTGCCTTGATCATCCCAACAACTTCTAA
AACTGGTCGTCCAATCTTGTCTAAGATGGTACCATTTACAATACCATTTGCATTGTCAGGAAATAAAGGTACAAGTGACC
CAGTCTTGTATAAATACCTTGAACTTCAAGACAAGGCAGTTACTGCAGATGAATATCAAAAAGCTCAAGAAAAATGGATG
AAAGAAAAAGCAGAATCCAATAAAAAAGCGCAAGAAGAACTCGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

58.333

100

0.584
  amiA3 Streptococcus thermophilus LMD-9

58.182

100

0.583
  amiA3 Streptococcus thermophilus LMG 18311

57.727

100

0.578

Multiple sequence alignment