Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ACLV7A_RS07790 Genome accession   NZ_OZ217344
Coordinates   1613604..1614653 (-) Length   349 a.a.
NCBI ID   WP_411864030.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis E22     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1608604..1619653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7A_RS07755 (SMIE22_15350) blpC 1609949..1610104 (+) 156 WP_411864028.1 quorum-sensing system pheromone BlpC -
  ACLV7A_RS07760 (SMIE22_15360) - 1610146..1611486 (-) 1341 WP_218757136.1 sensor histidine kinase -
  ACLV7A_RS07765 (SMIE22_15370) comE/blpR 1611500..1612237 (-) 738 WP_301352169.1 response regulator transcription factor Regulator
  ACLV7A_RS07770 (SMIE22_15380) - 1612242..1612580 (-) 339 WP_000682127.1 LytTR family DNA-binding domain-containing protein -
  ACLV7A_RS07775 (SMIE22_15390) - 1612746..1612880 (+) 135 WP_261233417.1 hypothetical protein -
  ACLV7A_RS07780 (SMIE22_15400) - 1612939..1613190 (+) 252 WP_057487500.1 hypothetical protein -
  ACLV7A_RS07785 (SMIE22_15410) - 1613219..1613542 (+) 324 WP_411864029.1 helicase BlpT -
  ACLV7A_RS07790 (SMIE22_15420) pptB 1613604..1614653 (-) 1050 WP_411864030.1 ABC transporter permease Regulator
  ACLV7A_RS07795 (SMIE22_15430) pptA 1614650..1615381 (-) 732 WP_023943392.1 ABC transporter ATP-binding protein Regulator
  ACLV7A_RS07800 (SMIE22_15440) - 1615449..1615859 (+) 411 WP_057487502.1 HIT family protein -
  ACLV7A_RS07805 (SMIE22_15450) - 1615869..1616156 (+) 288 WP_049487998.1 hypothetical protein -
  ACLV7A_RS07810 (SMIE22_15460) dnaJ 1616660..1617799 (-) 1140 WP_050275809.1 molecular chaperone DnaJ -
  ACLV7A_RS07815 (SMIE22_15470) - 1618108..1618740 (-) 633 WP_411864031.1 DJ-1/PfpI family protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40492.59 Da        Isoelectric Point: 9.9743

>NTDB_id=1170302 ACLV7A_RS07790 WP_411864030.1 1613604..1614653(-) (pptB) [Streptococcus mitis isolate S. mitis E22]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQDFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTDISLVFWLFVQTLFLLLFAPLFLAIGYGLPVFLVYVLLLGVGKYFLFRQKASKFYTETG
LNWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQAVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMLD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1170302 ACLV7A_RS07790 WP_411864030.1 1613604..1614653(-) (pptB) [Streptococcus mitis isolate S. mitis E22]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCTTTTCGTAAGGAGTGTCTTGGTTATTTGCGCTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGCTGGGATTTCTAGCCTACCAGTACAGTCAACTCTTGCAAGATTTTCCTGAAAATC
ATTGGCCTATCCTTTTATTTGTAGGAATTACGTCTGTTTTACTTTTGCTTTGGGGAGGAATTGCTACTTACATGGAGGCA
CCTGACAAGCTCTTTCTCTTGGTCGGAGAAGAGGAAATCAAGCTCCATCTAAAGCGTCAAACTGACATTTCCCTAGTCTT
TTGGCTTTTTGTCCAGACCCTTTTCTTACTTTTATTTGCGCCCCTATTTTTGGCAATTGGTTATGGTTTGCCTGTTTTTC
TGGTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCTCTTTCGTCAAAAGGCCAGCAAATTTTACACTGAAACTGGT
CTGAACTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCTCTATTTACGCAGGT
CAAGGGAATTTCAAACAGCGTCAAGCGTCGTGCCTATCTGGACTTTATCCTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATTTGCGAAATGGAGATCTCTTTGCCCTCAGTCTCCGTCTGCTCTTACTTTCC
TTGCTGGCGCAGGTCTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTACTGTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCACGCCTTTGACTACCAGTATTTGACTCAACTCTTTCCACTGGACAAGGGGCAAAAGGAAAAAG
GCTTGCAGGCGGTAGTCCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTGCTGGGTGCAGGTTTGGTTTTACTAGTCTTGTACTTACCTTATCAAGTAAAACGTCAGAT
GCTGGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

48.433

100

0.487

  pptB Streptococcus thermophilus LMD-9

47.578

100

0.479


Multiple sequence alignment