Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   ACLV7A_RS02060 Genome accession   NZ_OZ217344
Coordinates   398447..399106 (-) Length   219 a.a.
NCBI ID   WP_411863453.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis E22     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 393447..404106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7A_RS02030 (SMIE22_03930) - 393574..394140 (+) 567 WP_411863448.1 aminodeoxychorismate/anthranilate synthase component II -
  ACLV7A_RS02035 (SMIE22_03940) trpD 394151..395155 (+) 1005 WP_004256041.1 anthranilate phosphoribosyltransferase -
  ACLV7A_RS02040 (SMIE22_03950) trpC 395152..395919 (+) 768 WP_411863449.1 indole-3-glycerol phosphate synthase TrpC -
  ACLV7A_RS02045 (SMIE22_03960) - 395906..396505 (+) 600 WP_411863450.1 phosphoribosylanthranilate isomerase -
  ACLV7A_RS02050 (SMIE22_03970) trpB 396483..397706 (+) 1224 WP_411863451.1 tryptophan synthase subunit beta -
  ACLV7A_RS02055 (SMIE22_03980) trpA 397699..398475 (+) 777 WP_411863452.1 tryptophan synthase subunit alpha -
  ACLV7A_RS02060 (SMIE22_03990) cclA/cilC 398447..399106 (-) 660 WP_411863453.1 prepilin peptidase Machinery gene
  ACLV7A_RS02065 (SMIE22_04000) - 399176..399631 (+) 456 WP_411864203.1 GNAT family N-acetyltransferase -
  ACLV7A_RS02070 (SMIE22_04010) - 399788..400666 (-) 879 WP_411863454.1 SDR family NAD(P)-dependent oxidoreductase -
  ACLV7A_RS02075 (SMIE22_04020) - 400668..401504 (-) 837 WP_411863455.1 alpha/beta fold hydrolase -
  ACLV7A_RS02080 (SMIE22_04030) - 401518..402522 (-) 1005 WP_411863456.1 NADP-dependent oxidoreductase -
  ACLV7A_RS02085 (SMIE22_04040) - 402744..403175 (-) 432 WP_411863457.1 Rrf2 family transcriptional regulator -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24999.34 Da        Isoelectric Point: 7.5762

>NTDB_id=1170275 ACLV7A_RS02060 WP_411863453.1 398447..399106(-) (cclA/cilC) [Streptococcus mitis isolate S. mitis E22]
MIDFYFFLVGSILASFLGLVIDRFPEQSIIQPASHCDSCQTRLRPLDLIPILSQVLNRFRCRYCKAPYPIWYALFELGLG
LLFLLYSWELLSLSQVILITAGLTLGIYDFRHQEYPLLVWLTFHLILMAFCGWNLVMVFFLILGIMAHFIDIRMGAGDFL
FLASCALVFSATELLILIQFASAMGILAFLLQKKKERLPFVPFLLLAACVIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1170275 ACLV7A_RS02060 WP_411863453.1 398447..399106(-) (cclA/cilC) [Streptococcus mitis isolate S. mitis E22]
ATGATTGATTTTTATTTTTTTCTTGTCGGGAGCATTCTCGCTTCCTTTCTTGGTTTGGTTATTGACCGTTTTCCTGAGCA
ATCCATTATCCAACCTGCTAGTCACTGCGATTCCTGTCAGACTCGCTTGCGTCCCTTAGATTTGATTCCTATTCTCTCGC
AGGTGCTCAATCGCTTTCGCTGTCGCTACTGCAAGGCTCCTTATCCTATTTGGTATGCCCTCTTTGAACTAGGCTTAGGA
CTCCTCTTTCTGCTTTACTCTTGGGAATTACTTTCCTTGAGTCAAGTCATCCTAATCACTGCTGGCTTGACCTTGGGTAT
CTACGACTTTCGTCATCAGGAATATCCCTTACTGGTCTGGCTGACTTTCCACCTAATCCTCATGGCTTTCTGTGGTTGGA
ATCTAGTCATGGTCTTCTTCCTTATCCTTGGAATCATGGCCCATTTTATCGATATCCGCATGGGCGCAGGGGATTTTCTC
TTTCTTGCTTCTTGCGCTCTCGTCTTTAGCGCGACCGAATTACTGATCTTGATTCAGTTTGCTTCTGCGATGGGAATTCT
AGCCTTTCTCCTACAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTCGCTGCTTGTGTGATTATTTTTG
GTAAGCTACTGCTTGTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae Rx1

93.151

100

0.932

  cclA/cilC Streptococcus pneumoniae D39

93.151

100

0.932

  cclA/cilC Streptococcus pneumoniae R6

93.151

100

0.932

  cclA/cilC Streptococcus mitis SK321

92.237

100

0.922

  cclA/cilC Streptococcus pneumoniae TIGR4

89.041

100

0.89

  cclA/cilC Streptococcus mitis NCTC 12261

88.584

100

0.886


Multiple sequence alignment