Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   ACLV7Z_RS00110 Genome accession   NZ_OZ217343
Coordinates   20669..20905 (+) Length   78 a.a.
NCBI ID   WP_218774370.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 15669..25905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS00105 - 20215..20430 (-) 216 Protein_14 transposase -
  ACLV7Z_RS00110 (SMIG22_00180) comW 20669..20905 (+) 237 WP_218774370.1 sigma(X)-activator ComW Regulator
  ACLV7Z_RS00115 (SMIG22_00190) - 21136..22422 (+) 1287 WP_218774377.1 adenylosuccinate synthase -
  ACLV7Z_RS00120 (SMIG22_00210) tadA 22622..23089 (+) 468 WP_218774369.1 tRNA adenosine(34) deaminase TadA -
  ACLV7Z_RS00130 (SMIG22_00230) - 23276..23719 (+) 444 WP_218774368.1 dUTP diphosphatase -
  ACLV7Z_RS00135 (SMIG22_00240) - 23670..24236 (+) 567 WP_218774376.1 histidine phosphatase family protein -
  ACLV7Z_RS00140 (SMIG22_00250) radA 24250..25611 (+) 1362 WP_411882182.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9805.37 Da        Isoelectric Point: 7.3155

>NTDB_id=1170162 ACLV7Z_RS00110 WP_218774370.1 20669..20905(+) (comW) [Streptococcus mitis isolate S. mitis G22]
MLKSIYEQMADFYRNIEEEYGTVFGDHFDWEHFHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKMIMKQGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=1170162 ACLV7Z_RS00110 WP_218774370.1 20669..20905(+) (comW) [Streptococcus mitis isolate S. mitis G22]
ATGCTAAAAAGTATTTATGAGCAGATGGCAGATTTTTATAGAAATATTGAAGAAGAGTATGGTACTGTATTTGGTGATCA
TTTTGACTGGGAACATTTTCATTTTAAATTTTTGATTTATTATTTAGTCCGATATGGCATTGGGTGTCGTAGGGATTTTA
TCGTTTACCATTATCGGGTTGCTTATCGTTTGTATCTTGAAAAGATGATAATGAAACAAGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

82.051

100

0.821
  comW Streptococcus pneumoniae D39

82.051

100

0.821
  comW Streptococcus pneumoniae R6

82.051

100

0.821
  comW Streptococcus pneumoniae TIGR4

82.051

100

0.821
  comW Streptococcus mitis SK321

80.769

100

0.808
  comW Streptococcus mitis NCTC 12261

80.519

98.718

0.795

Multiple sequence alignment