Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV65_RS03670 Genome accession   NZ_OZ217342
Coordinates   704003..705979 (+) Length   658 a.a.
NCBI ID   WP_411864554.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 699003..710979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS03650 (SMIB22_07110) - 699946..700824 (+) 879 WP_000301223.1 F0F1 ATP synthase subunit gamma -
  ACLV65_RS03655 (SMIB22_07120) atpD 700910..702316 (+) 1407 WP_000094360.1 F0F1 ATP synthase subunit beta -
  ACLV65_RS03660 (SMIB22_07130) - 702327..702746 (+) 420 WP_000068041.1 F0F1 ATP synthase subunit epsilon -
  ACLV65_RS03665 (SMIB22_07140) - 702792..703805 (-) 1014 WP_411864553.1 lactonase family protein -
  ACLV65_RS03670 (SMIB22_07150) amiA 704003..705979 (+) 1977 WP_411864554.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV65_RS03675 (SMIB22_07160) - 706203..707369 (+) 1167 WP_411864555.1 AI-2E family transporter -
  ACLV65_RS03680 (SMIB22_07170) - 707359..708588 (+) 1230 WP_411864556.1 tetratricopeptide repeat protein -
  ACLV65_RS03685 (SMIB22_07180) - 708734..709375 (+) 642 WP_000120831.1 amino acid ABC transporter permease -
  ACLV65_RS03690 (SMIB22_07190) - 709385..710014 (+) 630 WP_301351039.1 amino acid ABC transporter ATP-binding protein -
  ACLV65_RS03695 (SMIB22_07200) - 710027..710863 (+) 837 WP_061438856.1 amino acid ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72445.63 Da        Isoelectric Point: 4.8791

>NTDB_id=1170119 ACLV65_RS03670 WP_411864554.1 704003..705979(+) (amiA) [Streptococcus mitis isolate S. mitis B22]
MKKRVFLAAGVAILSTAMLAACSTGGKDATKPVTYTYVFSTDPTTLDYTVSGTASTKQITGNVIDGLLENDQYGNLIPSV
AEDWTVSKDGLTYTYKIRQGVKWYTNEGEEYGEVKAQDFVTGLKHAADKKSQALYLVQDSVQGLDDYVNGKTTDFSTVGV
KATDDYTVVYTLNHPESFWNSKTTMGVLAPISEDFLASKGDDFGKATDVTSILYNGAYLLKGLTSKSSIEMTKNQNYWDK
QNVFIDDIKLSFFDGQDADSLGRGFDEGHYPAAPLFKNSANYERLKEKYKDNIVYGPQRGGTFYISTNIDRVAYNHTAKT
SDAEKSSTKKALLNKDFRQSLAFAADRTAAVSQVFGDEVAPRKLRTSFTPPTFVQVGEQSFGQVAKAELDKLDSAWKDVS
LDDAQDSLHNVDKAKAKFEVAKKTLQADGVQFPVHLDLPVSSTQTDFIRQAQSYKQSIEEALGSENIVIDIQQVSDDELG
NMTVFATSTDNIDWDINVNSGWSPDYADPSTYLDVFDPTSGPTLLGALGVAPGTDNPAIKAVGLDKFKELITDASGEKTD
LQKRYSKYAKAQAWLTDSALVIPVHSDGAQMLITKKVPGSGADGWVGDKTSEHSYKYQKLQDKIVTSKEMDEFRKKFADE
KAKSNADYQKNLDRHIQE

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1170119 ACLV65_RS03670 WP_411864554.1 704003..705979(+) (amiA) [Streptococcus mitis isolate S. mitis B22]
ATGAAAAAACGAGTTTTTCTAGCAGCTGGTGTAGCTATACTCTCGACGGCTATGCTAGCAGCGTGTTCAACAGGTGGTAA
AGATGCTACTAAACCTGTTACCTATACCTATGTCTTCTCTACAGATCCTACGACTCTGGATTATACAGTTTCTGGAACTG
CTAGCACCAAACAAATTACAGGTAATGTTATTGATGGTCTACTTGAAAATGACCAATATGGGAATCTGATTCCATCAGTT
GCAGAAGATTGGACTGTTTCAAAAGATGGTTTGACCTATACCTATAAAATCCGTCAGGGTGTCAAATGGTATACCAATGA
AGGCGAAGAGTATGGTGAAGTCAAAGCTCAGGACTTTGTAACTGGTCTGAAGCACGCAGCTGATAAAAAATCACAGGCTC
TTTATCTGGTTCAAGACTCGGTTCAAGGTTTGGACGATTATGTCAATGGGAAAACAACAGATTTCTCTACTGTTGGTGTA
AAAGCGACAGATGATTATACGGTTGTTTACACTTTGAATCATCCAGAATCTTTCTGGAATTCTAAGACAACAATGGGCGT
TCTTGCCCCAATTAGCGAGGACTTTTTGGCTTCTAAAGGAGATGACTTTGGGAAGGCGACTGATGTAACAAGCATTCTTT
ATAATGGTGCTTACCTCCTCAAGGGATTGACATCTAAATCTTCTATTGAGATGACCAAAAATCAAAACTATTGGGATAAG
CAAAATGTCTTTATTGATGATATTAAATTGTCTTTCTTTGATGGTCAGGATGCCGATTCTCTTGGACGAGGTTTTGATGA
GGGACATTATCCAGCGGCACCTCTCTTTAAAAATTCTGCCAATTATGAACGTCTAAAAGAAAAATACAAGGATAATATTG
TGTATGGGCCACAAAGAGGCGGAACTTTCTATATCTCAACTAATATCGATCGTGTAGCTTATAACCATACTGCTAAAACA
AGTGATGCGGAAAAATCATCCACTAAAAAGGCTTTGTTGAATAAAGATTTCCGTCAATCCTTGGCTTTCGCTGCGGATCG
TACTGCTGCAGTATCTCAAGTATTTGGGGACGAAGTGGCACCTCGTAAATTACGTACAAGTTTTACCCCTCCAACATTTG
TCCAAGTTGGAGAGCAGTCATTTGGGCAAGTAGCTAAGGCAGAACTGGATAAGTTGGATAGTGCTTGGAAAGATGTCAGT
CTTGATGATGCACAAGATTCACTTCATAATGTAGACAAGGCTAAAGCTAAATTTGAAGTTGCTAAGAAAACACTTCAAGC
CGATGGAGTACAGTTCCCCGTTCATTTAGACCTGCCAGTTTCCTCTACTCAGACAGATTTTATTCGTCAAGCCCAATCTT
ATAAACAATCCATTGAGGAAGCTTTAGGCTCTGAAAATATAGTGATTGACATTCAACAAGTTTCTGATGATGAATTGGGA
AATATGACAGTATTTGCAACATCAACTGACAATATTGATTGGGATATCAATGTAAATAGTGGTTGGAGTCCTGATTATGC
AGATCCATCAACCTATTTAGATGTATTCGATCCAACATCTGGCCCAACTCTTCTAGGAGCACTTGGTGTAGCACCAGGTA
CAGATAATCCGGCAATCAAAGCTGTTGGTTTAGATAAGTTTAAAGAGTTAATTACTGATGCTAGTGGTGAGAAAACAGAT
CTGCAAAAACGTTATTCTAAATATGCTAAAGCTCAAGCTTGGTTAACAGATAGTGCCTTGGTTATTCCTGTACACTCAGA
TGGTGCCCAAATGCTAATAACGAAGAAAGTTCCAGGTAGCGGTGCAGATGGTTGGGTAGGTGATAAGACAAGTGAACACA
GCTACAAGTACCAAAAATTACAAGACAAGATTGTAACGTCTAAAGAAATGGATGAGTTCCGTAAGAAATTTGCTGATGAA
AAAGCCAAATCAAATGCTGATTATCAGAAGAACTTAGACCGTCATATTCAAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.325

100

0.544
  amiA3 Streptococcus thermophilus LMD-9

54.091

100

0.543
  amiA3 Streptococcus thermophilus LMG 18311

53.636

100

0.538

Multiple sequence alignment