Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7Q_RS08715 Genome accession   NZ_OZ217341
Coordinates   1801430..1803388 (-) Length   652 a.a.
NCBI ID   WP_218757196.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1796430..1808388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS08705 (SMIC22_17150) amiA3 1797826..1799805 (-) 1980 WP_000857588.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7Q_RS08710 (SMIC22_17160) glf 1800042..1801142 (-) 1101 WP_218757195.1 UDP-galactopyranose mutase -
  ACLV7Q_RS08715 (SMIC22_17170) amiA3 1801430..1803388 (-) 1959 WP_218757196.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7Q_RS08720 (SMIC22_17180) - 1803585..1805192 (-) 1608 WP_001156789.1 glycoside hydrolase family 13 protein -
  ACLV7Q_RS08725 (SMIC22_17190) - 1805345..1806829 (+) 1485 WP_050259728.1 DUF1846 domain-containing protein -
  ACLV7Q_RS08730 (SMIC22_17200) - 1806924..1807406 (+) 483 WP_000032547.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72525.59 Da        Isoelectric Point: 4.9787

>NTDB_id=1170062 ACLV7Q_RS08715 WP_218757196.1 1801430..1803388(-) (amiA3) [Streptococcus mitis isolate S. mitis C22]
MTTKKRVLSAGLTFAAALLLAACGQSGSDTKTYSSTFSGNPTTFNYLLDYYADNTSIITNLVDGLLENDNHGNLVPSLAE
DWSVSSDGLTYSYKLRKDAKWFTADGEEYAPVKAQDFVTGIKYAVDNKSQAIDLIQNSIKGLNDYITGADSDFSKVGVKA
IDDQTVEYTLARPEPYWNSKTTNSILFPVNEEFLNSKGKDFGTLSPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDHDKV
SIEHVKLAYFDGSDQELTIRNFESGAYSIAGVYPNSSNFAKTKEKYKDNIIYSLQDKTSWYFNFNVNRKAYNHTSKTTDE
QKKSTETAVLNKNFRQAVNFALDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVVASKLVNYGTEWSGINLAD
AQDAYFNKEKAQAKFAEAKKELASQGVTFPIHLDVAVDQTSKNAVTGMNSVKQTLESVLGADNIVIDVQQLSTDDFNNVA
FLAPTPADRDYDLNFDGWVGDYQDPSTYLNPFNAEDGFYLKIFGLDAQEDKAKIASLGLDTYTKMLKDADSENKDVAKRY
EKYAEAQAWMIDNSLIMSAMSSGGTASVTKVTPFTRGYSLVGIKGDGNNYKYMKLQKDTVTTKQYEEAKTKWEQESKKAI
EKAQKEAEKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1170062 ACLV7Q_RS08715 WP_218757196.1 1801430..1803388(-) (amiA3) [Streptococcus mitis isolate S. mitis C22]
ATGACTACAAAAAAGCGTGTCCTTAGTGCAGGCCTGACTTTTGCGGCTGCTTTGCTTTTAGCTGCTTGCGGACAATCAGG
TTCAGATACAAAAACTTACTCATCAACCTTTAGTGGAAACCCAACTACATTTAACTACTTGTTAGACTACTACGCTGATA
ATACATCGATTATCACCAACCTAGTTGATGGTTTACTTGAAAATGACAACCATGGAAACCTAGTTCCGTCTTTGGCAGAA
GACTGGTCTGTGTCGAGCGACGGTCTGACTTATAGCTATAAATTGAGAAAAGATGCCAAATGGTTCACGGCTGACGGTGA
AGAGTACGCCCCAGTCAAGGCACAAGATTTTGTGACAGGTATCAAGTACGCAGTGGATAATAAATCCCAGGCCATTGACT
TGATTCAAAATTCAATCAAGGGCTTGAATGATTATATTACAGGAGCGGATTCTGACTTTTCTAAGGTTGGGGTGAAGGCC
ATTGACGACCAGACTGTTGAGTATACTTTGGCACGCCCAGAGCCTTACTGGAATTCAAAAACAACCAATAGTATTCTTTT
CCCGGTAAATGAAGAGTTTTTAAATTCAAAAGGGAAAGATTTTGGGACTCTATCTCCAGATAGCATTCTTTACAGTGGAC
CTTACTTGTTAAAAGATTTCACATCAAAATCATCTATTGAGTATGTGAAGAATCCGCATTACTATGATCATGACAAAGTA
TCAATTGAACATGTGAAATTGGCTTACTTTGATGGTTCAGACCAAGAATTGACTATCCGTAACTTTGAAAGTGGAGCTTA
TTCAATCGCTGGGGTTTATCCAAATAGTTCTAACTTCGCCAAGACCAAGGAGAAATATAAGGATAATATCATCTATAGCT
TGCAGGACAAGACTTCTTGGTATTTCAATTTCAACGTCAACCGTAAGGCTTACAACCATACGTCTAAAACGACAGATGAG
CAGAAGAAGTCAACTGAGACAGCTGTCTTGAACAAAAACTTCCGTCAAGCAGTGAACTTTGCCTTGGACCGCACAGCCTA
TTCTGCCCAGTCAAATGGGGAAGAAGCGGCTAGCAAGACCCTTCGTAACACCTTGGTGCCTCCTACATTTGTCCAAGTTG
GAGACAAGACCTTTGGAGAAGTAGTTGCTTCTAAATTGGTCAACTATGGCACAGAATGGTCAGGTATTAACCTGGCAGAT
GCTCAGGATGCCTATTTCAACAAAGAAAAAGCCCAAGCAAAATTTGCGGAAGCTAAAAAAGAATTGGCAAGTCAAGGTGT
GACCTTCCCAATTCACTTGGATGTAGCTGTTGATCAGACAAGTAAAAATGCCGTGACAGGCATGAACTCAGTTAAGCAGA
CCCTTGAGTCAGTTTTAGGTGCTGATAACATTGTCATTGATGTTCAGCAACTTTCAACAGATGATTTTAATAATGTAGCC
TTTTTAGCGCCGACTCCAGCTGATCGTGACTATGATTTGAACTTTGATGGTTGGGTAGGTGATTACCAAGATCCGTCAAC
CTATCTCAATCCTTTCAATGCAGAGGATGGGTTCTACCTCAAGATCTTTGGTCTAGATGCCCAGGAAGATAAAGCTAAGA
TTGCTAGCTTGGGGCTTGATACCTACACTAAGATGCTCAAAGATGCAGATAGTGAAAATAAAGATGTAGCCAAGCGCTAT
GAAAAATATGCTGAAGCACAGGCTTGGATGATTGACAATTCTCTGATTATGTCAGCCATGTCAAGTGGTGGTACAGCATC
TGTAACCAAAGTGACACCATTTACACGAGGGTATTCACTCGTCGGCATCAAGGGTGATGGCAATAACTACAAGTACATGA
AACTGCAAAAAGATACTGTGACAACCAAGCAGTATGAAGAAGCTAAGACCAAATGGGAGCAAGAAAGCAAAAAAGCAATC
GAAAAAGCTCAAAAAGAAGCAGAAAAACATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

50.685

100

0.511
  amiA3 Streptococcus thermophilus LMG 18311

50.228

100

0.506
  amiA Streptococcus salivarius strain HSISS4

50.152

100

0.505

Multiple sequence alignment