Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7Q_RS08705 Genome accession   NZ_OZ217341
Coordinates   1797826..1799805 (-) Length   659 a.a.
NCBI ID   WP_000857588.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1792826..1804805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS08685 (SMIC22_17110) gpsB 1793910..1794251 (-) 342 WP_000146532.1 cell division regulator GpsB -
  ACLV7Q_RS08690 (SMIC22_17120) - 1794321..1794848 (-) 528 WP_000179549.1 DUF1273 domain-containing protein -
  ACLV7Q_RS08695 (SMIC22_17130) recU 1794915..1795511 (+) 597 WP_000248774.1 Holliday junction resolvase RecU -
  ACLV7Q_RS08700 (SMIC22_17140) pbp1a 1795508..1797661 (+) 2154 WP_218757194.1 penicillin-binding protein PBP1A -
  ACLV7Q_RS08705 (SMIC22_17150) amiA3 1797826..1799805 (-) 1980 WP_000857588.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7Q_RS08710 (SMIC22_17160) glf 1800042..1801142 (-) 1101 WP_218757195.1 UDP-galactopyranose mutase -
  ACLV7Q_RS08715 (SMIC22_17170) amiA3 1801430..1803388 (-) 1959 WP_218757196.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72718.41 Da        Isoelectric Point: 4.7907

>NTDB_id=1170061 ACLV7Q_RS08705 WP_000857588.1 1797826..1799805(-) (amiA3) [Streptococcus mitis isolate S. mitis C22]
MKTRKVLALAGVTLLAAGVLAACSGGSGAQGEKTFAFTYETHPDNLNYLTTGKAATSEITSNVIDGLLENDKYGNLIPSM
AEDWSVSKDGLTYTYKIRQDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKAEALYLVQDSIKGLDAYAKGEITDFAQVGI
KALDDQTVQYTLNKPETFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSLLYNGPYLLKSIVTKSSVEFAKNPNYWDK
DNVHIDKVKLSFWDGQDTSKPAENFKDGSLTAARLYPTSASFAELEKSMKDNIVYTQQDSTTYLVGTNIDRQSYKHTSKT
SDEQKTSTKKALLNKDFRQAIAFGFDRTAYASQLNGETGASKILRNLFVPPTFVQADGKNFGDIVKEKLVTYGDEWKDVN
LADSQDGLYNPEKAKAEFAKAKSALQAEGVQFPIHLDMPVDQTATTKVQRVQSMKQSLEATLGTDNVVIDIQQLQKDELL
NVTLFAENAAGEDWDLSDNVGWGPDFADPSTYLDIIKPSVGESTKTYLGFDSGEDNVAAKKVGLYDYEKLVTEAGDETTD
VAKRYDKYAAAQAWLTDSALIIPTTSKTGRPILSKMVPFTIPFALSGNKGTSDPVLYKYLELQDKAVTADEYQKAQEKWM
KEKAESNKKAQEELAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1170061 ACLV7Q_RS08705 WP_000857588.1 1797826..1799805(-) (amiA3) [Streptococcus mitis isolate S. mitis C22]
ATGAAAACAAGAAAAGTATTGGCTCTTGCGGGAGTAACCTTATTAGCAGCTGGTGTTTTAGCTGCTTGTTCTGGGGGTTC
AGGTGCTCAAGGTGAAAAAACCTTTGCCTTTACCTACGAGACACATCCAGATAATCTCAACTATTTGACAACTGGTAAGG
CAGCAACTTCTGAGATTACTAGTAATGTGATCGATGGATTACTTGAAAATGATAAATACGGGAACCTTATTCCCTCAATG
GCAGAAGACTGGTCGGTCTCTAAGGATGGCTTGACTTATACTTATAAGATTCGTCAGGATGCCAAGTGGTATACATCTGA
GGGAGAAGAGTACGCTCCTGTTAAGGCTCAGGACTTTGTAACAGGACTTAAATATGCAACAGATAAGAAAGCAGAAGCCC
TTTACTTGGTACAGGATTCAATCAAAGGTCTGGATGCCTATGCCAAAGGTGAAATCACAGACTTTGCTCAAGTCGGGATT
AAAGCCCTTGACGATCAGACAGTCCAATACACCTTGAACAAACCTGAAACTTTTTGGAATTCTAAAACAACCATGGGTGT
GCTTGCGCCAGTCAATGAAGAGTTTTTGAATTCAAAAGGGGATGATTTTGCCAAAGCTACGGATCCAAGTAGTCTCTTGT
ATAACGGCCCTTATTTGTTGAAATCCATTGTAACTAAATCCTCTGTTGAATTTGCGAAAAATCCGAACTACTGGGATAAA
GACAATGTGCATATTGACAAGGTCAAATTGTCATTCTGGGATGGGCAAGATACCAGCAAACCAGCAGAAAACTTTAAAGA
TGGTAGCCTTACAGCAGCTCGTCTTTATCCAACAAGTGCAAGTTTCGCAGAGCTTGAGAAGAGTATGAAAGACAATATTG
TCTATACTCAACAAGACTCTACGACTTATTTAGTAGGAACAAATATTGACCGTCAATCTTATAAACACACATCTAAGACT
AGCGACGAACAAAAGACATCTACTAAAAAAGCTCTCTTAAACAAGGATTTCCGTCAGGCTATTGCCTTTGGTTTTGACCG
TACAGCTTATGCTTCTCAGTTGAATGGAGAAACTGGAGCAAGCAAAATCTTGCGTAATCTCTTTGTGCCACCAACATTTG
TTCAAGCAGATGGGAAGAACTTTGGCGATATAGTCAAAGAAAAATTAGTGACTTATGGGGATGAATGGAAGGATGTCAAT
CTTGCAGATTCACAAGATGGTCTCTACAATCCAGAAAAAGCTAAAGCAGAATTTGCCAAAGCCAAATCAGCCCTACAAGC
TGAGGGAGTACAATTCCCAATTCACCTAGATATGCCTGTTGACCAGACAGCAACTACAAAAGTTCAACGTGTCCAATCTA
TGAAACAATCCTTGGAAGCAACTTTAGGAACTGATAATGTCGTTATTGATATCCAACAATTGCAAAAAGATGAATTGCTT
AATGTAACTCTATTTGCCGAAAATGCTGCTGGCGAAGACTGGGATTTATCAGATAATGTCGGTTGGGGTCCAGACTTTGC
CGATCCATCAACCTACCTTGATATTATCAAACCTTCTGTAGGAGAAAGTACTAAAACATATTTAGGATTTGACTCAGGGG
AAGATAATGTAGCTGCTAAAAAAGTAGGTCTATATGACTACGAAAAATTGGTTACTGAAGCTGGTGATGAGACTACAGAT
GTTGCTAAACGATATGATAAATACGCAGCAGCCCAAGCTTGGTTGACAGATAGTGCCTTGATCATCCCAACAACTTCTAA
AACTGGTCGTCCAATCTTGTCTAAGATGGTACCATTTACAATACCATTTGCATTGTCAGGAAATAAAGGTACAAGTGACC
CAGTCTTGTATAAATACCTTGAACTTCAAGACAAGGCAGTTACTGCAGATGAATATCAAAAAGCTCAAGAAAAATGGATG
AAAGAAAAAGCAGAATCCAATAAAAAAGCGCAAGAAGAACTCGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.636

100

0.587
  amiA Streptococcus salivarius strain HSISS4

58.636

100

0.587
  amiA3 Streptococcus thermophilus LMG 18311

58.182

100

0.583

Multiple sequence alignment