Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV7H_RS08410 Genome accession   NZ_OZ217340
Coordinates   1643853..1645820 (-) Length   655 a.a.
NCBI ID   WP_411866924.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638853..1650820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS08395 (SORA22_16910) cps4B 1639381..1640112 (-) 732 WP_411866921.1 capsular polysaccharide biosynthesis protein Cps4B -
  ACLV7H_RS08400 (SORA22_16920) - 1640114..1641559 (-) 1446 WP_411866922.1 LCP family protein -
  ACLV7H_RS08405 (SORA22_16930) amiA3 1641745..1643706 (-) 1962 WP_411866923.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7H_RS08410 (SORA22_16940) amiA 1643853..1645820 (-) 1968 WP_411866924.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7H_RS08415 - 1646567..1647005 (+) 439 Protein_1608 IS3 family transposase -
  ACLV7H_RS08420 (SORA22_16960) - 1647018..1648628 (-) 1611 WP_411866925.1 glycoside hydrolase family 13 protein -
  ACLV7H_RS08425 (SORA22_16970) - 1648781..1650265 (+) 1485 WP_411866926.1 DUF1846 domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72427.86 Da        Isoelectric Point: 5.0129

>NTDB_id=1169979 ACLV7H_RS08410 WP_411866924.1 1643853..1645820(-) (amiA) [Streptococcus oralis isolate S. oralis A22]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYVSGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSAIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGANKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKEELQSKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKI
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1169979 ACLV7H_RS08410 WP_411866924.1 1643853..1645820(-) (amiA) [Streptococcus oralis isolate S. oralis A22]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCAGCCCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAAGCTGATGCTCCCAAGACATTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGACTATAGTGTGACGAGCA
AGAGCTCAACCTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGACAAGTATGGGAACTTAATTCCCTCA
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAGTACGCTGAAGTTAAGGCCAAAGACTTTGTAACTGGGCTTAAACATGCTGCTGATGGGAAATCAGATG
GCCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATGTCAGTGGTGAGAGCAATGATTTCTCTACCGTAGGA
GTTAAGGCTGTTGATGATTATACGGTAGAATACACGCTCAACAAACCAGAGAGTTTCTGGAACTCTAAGGTCACAACTGC
AACCATGCTTCCGGTTAATGAAGAATTTTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACCCCATCAGGTATCCTAT
ATAATGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGCCATTGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTCAAGATTGACAATATTAAACTAACCTTCTACGATGGATCAGACCAAGAATCCTTGATTCGTAGCTTTACACA
AGGTGCCTATACAACAGCCCGACTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAACAAGAGTACGGAGATAAGATTG
TTTACAGTCCACAAGAAGCGACAAGCTACTACCTCACTGTTAACGTAAACCGCCAATCTTACAATAAAACAGCTAAAACA
GACGAGGCTCAAAAAACTTCAACGAAAGAAGCTCTTCTTAACAAGAACTTCCGTCAGGCGCTGAACTTTGCCCTTGACCG
TCATTCTTACACGGCTCAGTTGAATGGTGAAGAAGGTGCGAACAAGATTATCCGTAACAGCCTAGTGCCACATGACTACG
TTCAAGTTGGTGAAAAGACCTTTGGAGAGTTGGCGCAGGCAGAGCTTGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGAAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCTGCCTTTGCTAAAGCCAAGGAAGAATTGCAGAG
CAAGGGAGTTACCTTCCCAATCCATTTGGATATCCCGGTTGAACAAACAGATGTAATCGCAGTTCAACAAACCAACTCAC
TCAAGCAGTCAATCGAATCATCGCTTGGTACTGAAAATGTCATTGTCGATGTCCTTCAAATGACAGATAATGAAAAAATT
AGCATTACGTCTCAAGCCAAGGTGCCATCTCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTACCTCAACATCCTTGATGCCAAGAAGGGATCGGCCCTTAAACACTTGGGAATCACTCGCGGAAAAGATC
CAGAAGTGATGGCTCAAGTTGGACTGGACGAATACAAGAAACTCTTGGATGATGCTGCAGCTGAAACCAGCGACCTTAAT
AAGCGTTATGAAAAATACGCCAAAGCTCAAGCTTGGGTGTCTGATAGCTCGCTCTTGATTCCAGTTGCTTCTTCAGGTGG
TTCTCCAACTGTTAGCCGAACTGTACCATTCACAAAAGCTTACTCTCAAGTCGGAATCAAGGGAGACCCATTTGTGTTCA
AAGGTTTGGAGTTGCAAAATGATGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAAACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.319

100

0.556
  amiA3 Streptococcus thermophilus LMD-9

54.021

100

0.544
  amiA3 Streptococcus thermophilus LMG 18311

53.566

100

0.539

Multiple sequence alignment