Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7H_RS08405 Genome accession   NZ_OZ217340
Coordinates   1641745..1643706 (-) Length   653 a.a.
NCBI ID   WP_411866923.1    Uniprot ID   -
Organism   Streptococcus oralis isolate S. oralis A22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1636745..1648706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7H_RS08385 (SORA22_16890) - 1637978..1638670 (-) 693 WP_411866919.1 tyrosine-protein kinase -
  ACLV7H_RS08390 (SORA22_16900) cpsC 1638680..1639372 (-) 693 WP_411866920.1 capsular polysaccharide biosynthesis protein CpsC -
  ACLV7H_RS08395 (SORA22_16910) cps4B 1639381..1640112 (-) 732 WP_411866921.1 capsular polysaccharide biosynthesis protein Cps4B -
  ACLV7H_RS08400 (SORA22_16920) - 1640114..1641559 (-) 1446 WP_411866922.1 LCP family protein -
  ACLV7H_RS08405 (SORA22_16930) amiA3 1641745..1643706 (-) 1962 WP_411866923.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7H_RS08410 (SORA22_16940) amiA 1643853..1645820 (-) 1968 WP_411866924.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7H_RS08415 - 1646567..1647005 (+) 439 Protein_1608 IS3 family transposase -
  ACLV7H_RS08420 (SORA22_16960) - 1647018..1648628 (-) 1611 WP_411866925.1 glycoside hydrolase family 13 protein -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 73097.42 Da        Isoelectric Point: 4.8329

>NTDB_id=1169978 ACLV7H_RS08405 WP_411866923.1 1641745..1643706(-) (amiA3) [Streptococcus oralis isolate S. oralis A22]
MIKMKKRLIGTGLVLATGILLSACGQSNTDTSTYSSTFSANPTTFNYLIDYYADNTAVITNLVDGLLENDSYGNLVPALA
EDWSVSSDGLTYTYKLRKDAKWYTADGEEYASVKAQDFVTGIKYAADNKGQAMDLIQNSIKGLNDYVTGVTNDFSTVGIK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKDFGTLTPDSILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFENGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKTYNHTAKITD
EQKKSAQTAILNKNFRQAINFGIDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDAYFNKEKAQAKFAEAKKELEAQGVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLGSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAETGFYIKIFGLDAKEDQELIKSLGLDTYTQLLKEADAENKDVAKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKDPVTKKQFDEAKTKWEAESKKA
IEKSQKEFENHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=1169978 ACLV7H_RS08405 WP_411866923.1 1641745..1643706(-) (amiA3) [Streptococcus oralis isolate S. oralis A22]
ATGATCAAAATGAAAAAAAGACTAATTGGGACAGGTCTTGTCTTAGCGACAGGGATTTTGCTCTCGGCATGTGGACAGTC
CAACACAGATACTAGCACTTATTCATCAACATTTAGTGCGAATCCGACAACTTTTAACTATCTTATAGATTATTATGCGG
ATAACACTGCCGTTATTACCAATCTCGTAGATGGTTTGTTAGAAAATGACAGCTATGGGAACCTCGTACCTGCTCTTGCG
GAGGATTGGTCTGTTTCATCAGATGGTTTGACCTATACCTACAAGCTTAGAAAAGATGCCAAGTGGTATACGGCTGATGG
TGAGGAATATGCTTCAGTCAAAGCTCAGGATTTTGTCACTGGGATCAAATATGCCGCTGACAACAAGGGGCAAGCCATGG
ATCTGATCCAAAATTCAATCAAGGGATTGAATGACTATGTGACGGGTGTGACTAATGACTTTTCAACTGTTGGTATCAAA
GCTTTGGACGACTATACGGTTGAGTACACTTTGACACGACCAGAACCTTATTGGAACTCTAAGACAACCAATAGTATTCT
TTTCCCAGTCAACGAAGAGTTCTTGAAATCAAAGGATAAAGATTTTGGTACCTTGACACCAGACAGTATTCTTTATAACG
GCCCCTATCTGTTAAAAGATTTCACATCAAAATCTTCGATCGAATATGTGAAGAATCCACATTATTATGACCATGACAAA
GTAACCATTGAAAAAGTTAAGTTAGCCTACTTTGATGGGTCAGATCAGGAGATGACCATTCGAAACTTTGAAAATGGTGC
TTACTCGATTGCAGGAGTCTATCCAAATAGTTCGAACTATGCTAAGACAAAAGAAAAATACCAAGACAATATCGTTTATA
GCTTACAAGACAAGACATCTTGGTACTTTAACTTTAACGTCAACCGCAAAACCTATAATCATACCGCTAAAATAACGGAC
GAACAAAAGAAATCAGCTCAAACAGCTATCTTAAATAAAAATTTCCGTCAGGCTATCAACTTTGGTATTGATCGAACAGC
CTACTCTGCTCAATCTAACGGTGAAGAAGCAGCGAGCAAAACCCTTCGTAATACTCTGGTTCCCCCAACATTTGTTCAGG
TGGGAGATAAGACCTTTGGAGAAGTAACAGCCTCTAAGCTTGTGAACTACGGAACTGAGTGGTCAGGTATCAATTTGGCA
GACGCTCAAGATGCTTACTTTAACAAGGAAAAGGCCCAAGCAAAATTTGCGGAAGCTAAAAAGGAATTGGAAGCCCAAGG
CGTGACTTTCCCAATCCATTTGGATGTCCCTGTTGATCAGACAAATAAAAATGCGGTCTCTGGTATGAACTCGGTTAAAC
AAACCCTTGAAACAGTACTAGGTTCTGACAATATCGTCATTGATGTTCAACAGCTTTCTACAGATGACTTTGGAAATGTT
GCCTTCCTAGCACCAAATCCAGCAGCTCGTGACTACGACCTAAACTTTGATGGTTGGGTTGGTGATTACCAGGATCCATC
AACTTATCTAGACCCCTTCAATGCTGAAACTGGCTTCTATATCAAGATTTTTGGTCTTGATGCCAAGGAAGACCAAGAGC
TCATTAAGAGTTTGGGACTCGATACCTATACACAACTCCTGAAAGAAGCAGATGCTGAGAATAAAGATGTCGCTAAGCGT
TATGAGAAATACGCTGAAGCTCAAGCTTGGATGATTGACAATTCTCTAGTCATGTCTGCTATGTCAAATGGTGGGACAGC
CTCTGTAACCAAAGTAACTCCGTTTACACGTGCATACTCCCTAGTGGGAATCAAGGGTGACGGAAATAATTATAAGTACA
TGAGATTACAAAAAGACCCTGTTACCAAGAAACAATTTGACGAAGCCAAGACTAAGTGGGAAGCAGAAAGTAAAAAGGCT
ATTGAAAAGAGTCAAAAAGAGTTTGAAAACCACGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.294

100

0.516
  amiA3 Streptococcus thermophilus LMG 18311

51.142

100

0.515
  amiA Streptococcus salivarius strain HSISS4

50.457

100

0.507

Multiple sequence alignment