Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACNUEE_RS02555 Genome accession   NZ_OZ197100
Coordinates   501616..502740 (-) Length   374 a.a.
NCBI ID   WP_089621766.1    Uniprot ID   -
Organism   Escherichia coli isolate 23S01245-7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 496616..507740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEE_RS02525 yrdA 498416..498970 (+) 555 WP_001613937.1 gamma carbonic anhydrase family protein -
  ACNUEE_RS02530 yrdB 498946..499203 (-) 258 WP_001070590.1 DUF1488 domain-containing protein -
  ACNUEE_RS02535 aroE 499200..500018 (-) 819 WP_033814716.1 shikimate dehydrogenase -
  ACNUEE_RS02540 tsaC 500023..500595 (-) 573 WP_001301437.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  ACNUEE_RS02545 yrdD 500600..501142 (-) 543 WP_001129726.1 type I DNA topoisomerase -
  ACNUEE_RS02550 smg 501171..501644 (-) 474 WP_089621765.1 DUF494 family protein Smg -
  ACNUEE_RS02555 dprA 501616..502740 (-) 1125 WP_089621766.1 DNA-protecting protein DprA Machinery gene
  ACNUEE_RS02560 def 502870..503379 (+) 510 WP_000114984.1 peptide deformylase -
  ACNUEE_RS02565 fmt 503394..504341 (+) 948 WP_000004459.1 methionyl-tRNA formyltransferase -
  ACNUEE_RS02570 rsmB 504387..505676 (+) 1290 WP_089621767.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ACNUEE_RS02575 trkA 505698..507074 (+) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  ACNUEE_RS02580 mscL 507204..507614 (+) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40962.98 Da        Isoelectric Point: 6.4999

>NTDB_id=1169585 ACNUEE_RS02555 WP_089621766.1 501616..502740(-) (dprA) [Escherichia coli isolate 23S01245-7]
MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLAKHGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPKEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=1169585 ACNUEE_RS02555 WP_089621766.1 501616..502740(-) (dprA) [Escherichia coli isolate 23S01245-7]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGTATCAGCAGCTTGTACGGCGATGATATGGTCCGTATCGCTCACTG
GGTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCACGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGAAGCATGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTAGCGCATAAAGCAGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGTCATGCCCGACTGGCTGCCAGTCTGCT
TGAACAGGGGGGCGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCTCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGTAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGAGAAGTTTTTGCCTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGAAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.78

98.663

0.481
  dprA Vibrio cholerae strain A1552

49.355

82.888

0.409
  dprA Glaesserella parasuis strain SC1401

45.104

90.107

0.406
  dprA Haemophilus influenzae Rd KW20

44.51

90.107

0.401
  dprA Legionella pneumophila strain ERS1305867

44.545

88.235

0.393

Multiple sequence alignment